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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CCBE1
collagen and calcium binding EGF domains 1
Chromosome 18 Β· 18q21.32
NCBI Gene: 147372Ensembl: ENSG00000183287.15HGNC: HGNC:29426UniProt: A0A8Q3WKU1
41PubMed Papers
21Diseases
0Drugs
18Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingGO:0005615extracellular matrixcollagen bindingHennekam syndromeAbnormality of the skeletal systemalcohol drinkinghydrops fetalis
✦AI Summary

CCBE1 is a secreted extracellular matrix protein essential for lymphatic and cardiac vascular development during embryogenesis 1. Mechanistically, CCBE1 functions by enhancing proteolysis of VEGF-C, activating VEGFR3-dependent lymphangiogenic signaling 23. During cardiac development, CCBE1 is expressed in cardiac progenitors and the epicardium, where it is required for proper coronary vessel formation 1. Additionally, CCBE1 promotes angiogenesis through VEGFC-mediated VEGFR2 activation 3. CCBE1 mutations cause Hennekam lymphangiectasia-lymphedema syndrome 1, characterized by lymphatic malformations, primary lymphedema, and cardiac defects 1. In cancer contexts, CCBE1 expression is dysregulated and protumorigenic. Elevated CCBE1 in colorectal and rectal cancers correlates with increased lymphatic vessel density, lymph node metastasis, and poor prognosis 24. Cancer-associated fibroblasts secrete CCBE1 to promote tumor lymphangiogenesis and metastasis 2. TGF-Ξ² signaling negatively regulates CCBE1 transcription, and loss of this pathway correlates with elevated CCBE1 in tumors 2. Beyond cancer, CCBE1 loss drives secondary lymphedema, and CCBE1 restoration via transcription factor E2F8 represents a therapeutic strategy 5.

Sources cited
1
CCBE1 is essential for lymphangiogenesis and cardiac development, required for coronary vessel formation; mutations cause Hennekam syndrome with lymphatic malformations and heart defects
PMID: 35222551
2
CCBE1 promotes VEGFC proteolysis and tumor lymphangiogenesis in colorectal cancer; TGF-Ξ² signaling negatively regulates CCBE1 transcription via SMAD binding
PMID: 32089745
3
CCBE1 enhances blood vessel formation through VEGFC-VEGFR2 activation and promotes tumor angiogenesis and growth in colorectal cancer
PMID: 34819004
4
CCBE1 expression is significantly elevated in rectal cancer tissues and correlates with lymphatic metastasis, lymphatic vessel density, and poor survival
PMID: 28387911
5
SLP-2 positively regulates CCBE1 expression in rectal cancer lymphatic tissues, controlling lymphangiogenesis
PMID: 29364474
6
CCBE1 transcription is controlled by E2F8 binding to the CCBE1 promoter and is critical for lymphatic function restoration in secondary lymphedema
PMID: 38177539
7
CCBE1 functions as a tumor-suppressor gene; PHB2 recruits HDAC1 to inhibit CCBE1 transcription in melanoma tumorigenesis
PMID: 39333493
Disease Associationsβ“˜21
Hennekam syndromeOpen Targets
0.82Strong
Abnormality of the skeletal systemOpen Targets
0.49Moderate
alcohol drinkingOpen Targets
0.42Moderate
hydrops fetalisOpen Targets
0.37Weak
hypothyroidismOpen Targets
0.35Weak
corneal ulcerOpen Targets
0.32Weak
open-angle glaucomaOpen Targets
0.31Weak
bone remodeling diseaseOpen Targets
0.28Weak
multinodular goiterOpen Targets
0.28Weak
subacute thyroiditisOpen Targets
0.26Weak
brain aneurysmOpen Targets
0.26Weak
thyroid diseaseOpen Targets
0.25Weak
corneal dystrophyOpen Targets
0.24Weak
Hashimoto's thyroiditisOpen Targets
0.22Weak
genetic disorderOpen Targets
0.19Weak
hypertensionOpen Targets
0.17Weak
BlindnessOpen Targets
0.16Weak
ulcerative colitisOpen Targets
0.16Weak
renal tubular acidosis, distal, 4, with hemolytic anemiaOpen Targets
0.12Weak
COVID-19Open Targets
0.11Weak
Hennekam lymphangiectasia-lymphedema syndrome 1UniProt
Pathogenic Variants18
NM_133459.4(CCBE1):c.223T>A (p.Cys75Ser)Pathogenic
Hennekam lymphangiectasia-lymphedema syndrome 1|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 75
NM_133459.4(CCBE1):c.322C>T (p.Arg108Ter)Pathogenic
not provided|Hennekam lymphangiectasia-lymphedema syndrome 1
β˜…β˜…β˜†β˜†2024β†’ Residue 108
NM_133459.4(CCBE1):c.683_684insT (p.Leu229fs)Pathogenic
Hennekam lymphangiectasia-lymphedema syndrome 1|not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 229
NM_133459.4(CCBE1):c.520T>C (p.Cys174Arg)Pathogenic
Hennekam lymphangiectasia-lymphedema syndrome 1|not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 174
NM_133459.4(CCBE1):c.3G>A (p.Met1Ile)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 1
NM_133459.4(CCBE1):c.352C>T (p.Arg118Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 118
NM_133459.4(CCBE1):c.294T>A (p.Cys98Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 98
NM_133459.4(CCBE1):c.262G>T (p.Glu88Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 88
NM_133459.4(CCBE1):c.951+1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_133459.4(CCBE1):c.265+1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2023
NM_133459.4(CCBE1):c.37_58del (p.Arg13fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 13
NM_133459.4(CCBE1):c.916-2A>TLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2022
NM_133459.4(CCBE1):c.477C>A (p.Cys159Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 159
NM_133459.4(CCBE1):c.886dup (p.His296fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 296
NM_133459.4(CCBE1):c.293G>A (p.Cys98Tyr)Likely pathogenic
Hennekam lymphangiectasia-lymphedema syndrome 1
β˜…β˜†β˜†β˜†2022β†’ Residue 98
NM_133459.4(CCBE1):c.400+1delLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2017
NM_133459.4(CCBE1):c.979G>C (p.Gly327Arg)Pathogenic
Hennekam lymphangiectasia-lymphedema syndrome 1
β˜†β˜†β˜†β˜†2009β†’ Residue 327
NM_133459.4(CCBE1):c.305G>C (p.Cys102Ser)Pathogenic
Hennekam lymphangiectasia-lymphedema syndrome 1
β˜†β˜†β˜†β˜†2009β†’ Residue 102
View on ClinVar β†—
Related Genes
VEGFCProtein interaction93%ADAMTS2Protein interaction85%ADAMTS3Protein interaction83%SMOC2Shared pathway17%TMEM215Shared pathway14%WARS2Shared pathway14%
Tissue Expression6 tissues
Ovary
100%
Lung
48%
Liver
18%
Brain
5%
Heart
5%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CCBE1VEGFCADAMTS2ADAMTS3SMOC2TMEM215WARS2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q6UXH8
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.93LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.70 [0.53–0.93]
RankingsWhere CCBE1 stands among ~20K protein-coding genes
  • #9,977of 20,598
    Most Researched41
  • #2,299of 5,498
    Most Pathogenic Variants18
  • #8,639of 17,882
    Most Constrained (LOEUF)0.93
Genes detectedCCBE1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
CCBE1 in Cardiac Development and Disease.
PMID: 35222551
Front Genet Β· 2022
1.00
2
Expression of SLP-2 gene and CCBE1 are associated with prognosis of rectal cancer.
PMID: 28387911
Eur Rev Med Pharmacol Sci Β· 2017
0.90
3
Prohibitin 2 orchestrates long noncoding RNA and gene transcription to accelerate tumorigenesis.
PMID: 39333493
Nat Commun Β· 2024
0.80
4
CCBE1 promotes tumor lymphangiogenesis and is negatively regulated by TGFΞ² signaling in colorectal cancer.
PMID: 32089745
Theranostics Β· 2020
0.70
5
Full-length human CCBE1 production and purification: leveraging bioprocess development for high quality glycosylation attributes and functionality.
PMID: 30165116
J Biotechnol Β· 2018
0.60