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26 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CCNA1
cyclin A1
Chromosome 13 · 13q13.3
NCBI Gene: 8900Ensembl: ENSG00000133101.11HGNC: HGNC:1577UniProt: A0A140VJG0
168PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
microtubule cytoskeletonprotein bindingG1/S transition of mitotic cell cyclenucleusresponse to antihypertensive drugParkinson diseaseamyotrophic lateral sclerosisneoplasm
✦AI Summary

CCNA1 (cyclin A1) is a cell cycle regulator primarily functioning in meiotic progression and mitotic cell cycle control. It controls transitions at G1/S and G2/M checkpoints 1, with particularly high expression in late spermatocytes where it is essential for meiotic division. CCNA1 is regulated transcriptionally by factors including RNF6, which binds its promoter in gastric cancer cells 2, and by TRIM13-mediated ubiquitination that suppresses self-renewal in acute myeloid leukemia 3. Clinically, CCNA1 is highly relevant to cancer development through epigenetic silencing. Aberrant CCNA1 promoter methylation occurs significantly more frequently in cancer tissues than normal tissues across multiple populations 45. HPV-16 E7 oncoprotein drives CCNA1 methylation by forming complexes with DNA methyltransferase 1 at the CCNA1 promoter, suppressing expression in cervical and head-neck cancers 6. CCNA1 promoter methylation demonstrates high specificity (99.3-99.5%) as a biomarker for detecting high-grade cervical intraepithelial lesions in HPV-positive women 78, with positive predictive values of 80-89% for identifying significant cervical pathology. These findings suggest CCNA1 methylation serves as a valuable non-invasive biomarker for cancer risk stratification and early lesion detection.

Sources cited
1
CCNA1 methylation frequency is significantly higher in cancer tissues than normal tissues across multiple ethnic populations
PMID: 25654082
2
RNF6 regulates CCNA1 transcription by binding its promoter in gastric cancer cells, promoting cancer progression
PMID: 37904524
3
TRIM13 suppresses leukemic self-renewal through ubiquitination of CCNA1, and CHAF1B-mediated TRIM13 repression promotes AML progression
PMID: 37205848
4
HPV-16 E7 oncoprotein induces CCNA1 promoter methylation through interaction with DNMT1, suppressing CCNA1 expression in cervical cancer
PMID: 26250467
5
CCNA1 promoter methylation has 99.5% specificity and high positive predictive value for detecting CIN2+ lesions in HPV-positive women
PMID: 33112548
6
CCNA1 methylation has 99.3% specificity and 80% positive predictive value for detecting high-grade cervical lesions in ASC-US patients
PMID: 32102526
7
CCNA1 is expressed specifically in late spermatocytes and required for meiotic cell division, with promoter sequences directing male germ-cell specific expression
PMID: 15215197
8
CCNA1 promoter methylation frequency is significantly higher in cervical lesions (LSIL/HSIL) and cervical cancer compared to control specimens
PMID: 33441308
Disease Associationsⓘ20
response to antihypertensive drugOpen Targets
0.23Weak
Parkinson diseaseOpen Targets
0.14Weak
amyotrophic lateral sclerosisOpen Targets
0.14Weak
neoplasmOpen Targets
0.10Weak
azoospermiaOpen Targets
0.10Suggestive
smoking initiationOpen Targets
0.09Suggestive
head and neck squamous cell carcinomaOpen Targets
0.09Suggestive
partial chromosome Y deletionOpen Targets
0.09Suggestive
spermatogenic failure 48Open Targets
0.09Suggestive
spermatogenic failure 57Open Targets
0.08Suggestive
spermatogenic failure 50Open Targets
0.08Suggestive
spermatogenic failure 25Open Targets
0.08Suggestive
spermatogenic failure 59Open Targets
0.08Suggestive
spermatogenic failure 60Open Targets
0.08Suggestive
spermatogenic failure 73Open Targets
0.08Suggestive
spermatogenic failure 74Open Targets
0.08Suggestive
spermatogenic failure 61Open Targets
0.08Suggestive
spermatogenic failure 62Open Targets
0.08Suggestive
spermatogenic failure 88Open Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CDK1Protein interaction100%CDK3Protein interaction100%CDK4Protein interaction100%CDK5Protein interaction100%CDKN1BProtein interaction100%CDKN1CProtein interaction100%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
68%
Lung
6%
Ovary
4%
Heart
2%
Liver
1%
Gene Interaction Network
Click a node to explore
CCNA1CDK1CDK3CDK4CDK5CDKN1BCDKN1C
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P78396
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.58Moderately Constrained
pLIⓘ
0.46Tolerant
Observed/Expected LoF0.40 [0.28–0.58]
RankingsWhere CCNA1 stands among ~20K protein-coding genes
  • #2,642of 20,598
    Most Researched168 · top quartile
  • #3,908of 17,882
    Most Constrained (LOEUF)0.58 · top quartile
Genes detectedCCNA1
Sources retrieved26 papers
Response time—
📄 Sources
26▼
1
Correlation of CCNA1 promoter methylation with malignant tumors: a meta-analysis introduction.
PMID: 25654082
Biomed Res Int · 2015
1.00
2
RNF6 promotes gastric cancer progression by regulating CCNA1/CREBBP transcription.
PMID: 37904524
Cell Cycle · 2023
0.90
3
Repression of TRIM13 by chromatin assembly factor CHAF1B is critical for AML development.
PMID: 37205848
Blood Adv · 2023
0.80
4
Polycomb EZH1 regulates cell cycle/5-fluorouracil sensitivity of neuroblastoma cells in concert with MYCN.
PMID: 36052716
Cancer Sci · 2022
0.76
5
Human papillomavirus type 16 E7 oncoprotein mediates CCNA1 promoter methylation.
PMID: 26250467
Cancer Sci · 2015
0.70