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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CCNT1
cyclin T1
Chromosome 12 · 12q13.11-q13.12
NCBI Gene: 904Ensembl: ENSG00000129315.13HGNC: HGNC:1599UniProt: A8K4M5
428PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTranscription Factor
RESEARCH IMPACT
Highly Studied
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleolus7SK snRNA bindingDNA-binding transcription factor bindingmolecular condensate scaffold activityHIV infectionneurodegenerative diseaseacute myeloid leukemiatransient myeloproliferative syndrome
✦AI Summary

CCNT1 (cyclin T1) is a critical regulatory protein that serves as the cyclin subunit of the positive transcription elongation factor b (P-TEFb) complex, which promotes RNA polymerase II transcriptional elongation 12. The protein functions by forming the catalytic core of P-TEFb with CDK9, enabling transcription elongation through phosphorylation of RNA polymerase II 34. CCNT1 is regulated by 7SK snRNA, which sequesters P-TEFb in an inactive state until released by signaling events such as EGF-induced METTL3-mediated 7SK methylation 1. The protein forms multiple distinct complexes (CCAPs) that can negatively regulate its availability for transcriptional activation 2. In HIV-1 infection, CCNT1 serves as an essential cofactor for viral Tat protein, binding to Tat and enhancing its affinity for TAR RNA to promote viral gene transcription 5. CCNT1 shows species-specific differences, with a single amino acid change (C261Y) conferring resistance to HIV-1 in rodent cells, which has been exploited to engineer HIV-resistant human T cells 6. The protein is absolutely required for HIV latency reversal, making it a critical target for HIV cure strategies 34. Alternative splicing of CCNT1 during HIV infection affects its functional domains and viral transcription efficiency 7.

Sources cited
1
CCNT1 is part of P-TEFb complex that is regulated by 7SK snRNA and released by EGF signaling-induced METTL3 methylation
PMID: 37163588
2
CCNT1 forms the catalytic core of P-TEFb with CDK9 and participates in multiple regulatory complexes (CCAPs)
PMID: 23110726
3
CCNT1 knockout was the top hit preventing HIV latency reversal and is absolutely required for this process
PMID: 37546973
4
CCNT1 function is non-essential in T cells but absolutely required for HIV latency reversal
PMID: 37766271
5
CCNT1 shows species-specific incompatibilities affecting HIV-1 gene expression in rodent cells
PMID: 29321323
6
Engineering mouse-informed amino acid change (C261Y) in human CCNT1 confers HIV-1 resistance
PMID: 37676006
7
Alternative splicing of CCNT1 during HIV infection affects exon 7 skipping and viral transcriptional elongation
PMID: 32241262
Disease Associationsⓘ20
HIV infectionOpen Targets
0.59Moderate
neurodegenerative diseaseOpen Targets
0.37Weak
acute myeloid leukemiaOpen Targets
0.23Weak
transient myeloproliferative syndromeOpen Targets
0.06Suggestive
Adult-onset autosomal recessive sideroblastic anemiaOpen Targets
0.05Suggestive
Hashimoto's thyroiditisOpen Targets
0.05Suggestive
neutrophil immunodeficiency syndromeOpen Targets
0.05Suggestive
hemoglobin D diseaseOpen Targets
0.05Suggestive
complement component C1s deficiencyOpen Targets
0.04Suggestive
Hemoglobin E - beta-thalassemiaOpen Targets
0.04Suggestive
hemoglobin E-beta-thalassemia syndromeOpen Targets
0.04Suggestive
dehydrated hereditary stomatocytosisOpen Targets
0.04Suggestive
Autosomal recessive systemic lupus erythematosusOpen Targets
0.04Suggestive
autosomal systemic lupus erythematosus type 16Open Targets
0.04Suggestive
neutropenia, severe congenital, 2, autosomal dominantOpen Targets
0.04Suggestive
immunodeficiency due to MASP-2 deficiencyOpen Targets
0.04Suggestive
inflammatory bowel disease (infantile ulcerative colitis) 31, autosomal recessiveOpen Targets
0.04Suggestive
microcytic anemia with liver iron overloadOpen Targets
0.04Suggestive
hemoglobin E diseaseOpen Targets
0.04Suggestive
C1Q deficiency 1Open Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
GTF2H3Protein interaction100%ERCC3Protein interaction100%GTF2H2Protein interaction100%ERCC2Protein interaction100%GTF2H1Protein interaction100%HEXIM1Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
36%
Lung
34%
Brain
33%
Liver
26%
Heart
25%
Gene Interaction Network
Click a node to explore
CCNT1GTF2H3ERCC3GTF2H2ERCC2GTF2H1HEXIM1
PROTEIN STRUCTURE
Preparing viewer…
PDB3MI9 · 2.10 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.31Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.17 [0.10–0.31]
RankingsWhere CCNT1 stands among ~20K protein-coding genes
  • #654of 20,598
    Most Researched428 · top 5%
  • #1,217of 17,882
    Most Constrained (LOEUF)0.31 · top 10%
Genes detectedCCNT1
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
7SK methylation by METTL3 promotes transcriptional activity.
PMID: 37163588
Sci Adv · 2023
1.00
2
Identification of novel CDK9 and Cyclin T1-associated protein complexes (CCAPs) whose siRNA depletion enhances HIV-1 Tat function.
PMID: 23110726
Retrovirology · 2012
0.90
3
A novel methylation signature predicts inferior outcome of patients with PDAC.
PMID: 33550277
Aging (Albany NY) · 2021
0.84
4
HIV-1 Vif's Capacity To Manipulate the Cell Cycle Is Species Specific.
PMID: 29321323
J Virol · 2018
0.80
5
Exploiting a rodent cell block for intrinsic resistance to HIV-1 gene expression in human T cells.
PMID: 37676006
mBio · 2023
0.70