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19 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CDK11B
cyclin dependent kinase 11B
Chromosome 1 · 1p36.33
NCBI Gene: 984Ensembl: ENSG00000248333.10HGNC: HGNC:1729UniProt: B4DII1
152PubMed Papers
20Diseases
4Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Kinase
CLINICAL
Clinical Trials
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
regulation of mRNA splicing, via spliceosomeregulation of mRNA processingchromosomenucleusAlzheimer diseaseneurodegenerative diseaseParkinson diseaselysosomal storage disease
✦AI Summary

CDK11B (cyclin dependent kinase 11B) is a cell cycle-regulated kinase that plays critical roles in transcriptional regulation and cellular proliferation. The protein is specifically expressed during G2-M phases of the cell cycle and functions as a key regulator of RNA polymerase II activity, phosphorylating serine-2 of the C-terminal domain (CTD) to promote transcriptional processes 1. CDK11B promotes centromeric transcription to maintain chromosome 1 during mitosis, highlighting its importance in proper cell division 21. The kinase demonstrates significant disease relevance across multiple cancer types, with studies showing that cancer cells are addicted to CDK11B expression for proliferation 3. In hepatocellular carcinoma, CDK11B promotes tumor growth and is stabilized by USP22 deubiquitinase activity 4. The protein also contributes to cancer stem cell self-renewal through SPDEF ubiquitination pathways 5. Additionally, CDK11B participates in liver fibrosis pathogenesis, where kinase inhibitors show therapeutic potential 6. Loss-of-function mutations in CDK11B have been identified in rare cancers like sclerosing microcystic adenocarcinoma 7, and the gene shows prognostic significance in osteosarcoma 8. These findings establish CDK11B as a promising therapeutic target across multiple pathological contexts.

Sources cited
1
CDK11B phosphorylates serine-2 of RNA polymerase II CTD and promotes centromeric transcription
PMID: 38019613
2
CDK11B maintains centromeric cohesion during mitosis
PMID: 24436071
3
Multiple cancer types are addicted to CDK11B expression for proliferation
PMID: 31511426
4
CDK11B promotes hepatocellular carcinoma proliferation and is stabilized by USP22
PMID: 40341781
5
CDK11B mediates SPDEF ubiquitination and affects hepatocellular carcinoma stem cell self-renewal
PMID: 33328586
6
CDK11B is involved in liver fibrosis pathogenesis and represents a therapeutic target
PMID: 40368138
7
Loss-of-function mutations in CDK11B identified in sclerosing microcystic adenocarcinoma
PMID: 33109575
8
CDK11B shows prognostic significance in osteosarcoma
PMID: 39357043
Disease Associationsⓘ20
Alzheimer diseaseOpen Targets
0.32Weak
neurodegenerative diseaseOpen Targets
0.31Weak
lysosomal storage diseaseOpen Targets
0.31Weak
multiple sclerosisOpen Targets
0.31Weak
Parkinson diseaseOpen Targets
0.31Weak
Abnormality of the skeletal systemOpen Targets
0.28Weak
obesityOpen Targets
0.16Weak
Brachymorphism-onychodysplasia-dysphalangism syndromeOpen Targets
0.15Weak
SeizureOpen Targets
0.12Weak
neoplasmOpen Targets
0.11Weak
breast cancerOpen Targets
0.11Weak
osteosarcomaOpen Targets
0.10Suggestive
small cell lung carcinomaOpen Targets
0.10Suggestive
cancerOpen Targets
0.09Suggestive
prostate cancerOpen Targets
0.09Suggestive
melanomaOpen Targets
0.08Suggestive
chronic lymphocytic leukemiaOpen Targets
0.07Suggestive
Mantle cell lymphomaOpen Targets
0.07Suggestive
type 1 diabetes mellitusOpen Targets
0.06Suggestive
multiple myelomaOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets4
AT-7519Phase II
Cyclin-dependent kinase inhibitor
chronic lymphocytic leukemia
AZD-5438Phase I
Cyclin-dependent kinase inhibitor
PHA-793887Phase I
Cyclin-dependent kinase inhibitor
RONICICLIBPhase II
Cyclin-dependent kinase inhibitor
small cell lung carcinoma
Related Genes
HSP90AA1Protein interaction100%CDK11AShared pathway89%MMP23BProtein interaction86%PCNTProtein interaction84%SAP30BPProtein interaction84%MMP21Protein interaction76%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
77%
Ovary
64%
Liver
58%
Brain
55%
Heart
46%
Gene Interaction Network
Click a node to explore
CDK11BHSP90AA1CDK11AMMP23BPCNTSAP30BPMMP21
PROTEIN STRUCTURE
Preparing viewer…
PDB7UKZ · 2.60 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.90LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.66 [0.49–0.90]
RankingsWhere CDK11B stands among ~20K protein-coding genes
  • #2,968of 20,598
    Most Researched152 · top quartile
  • #8,159of 17,882
    Most Constrained (LOEUF)0.90
Genes detectedCDK11B
Sources retrieved19 papers
Response time—
📄 Sources
19▼
1
Off-target toxicity is a common mechanism of action of cancer drugs undergoing clinical trials.
PMID: 31511426
Sci Transl Med · 2019
1.00
2
USP22 promotes the proliferation and Sorafenib resistance of hepatocellular carcinoma cells via its deubiquitinase activity.
PMID: 40341781
Clin Transl Med · 2025
0.90
3
Proteomics and Phosphoproteomics Revealed Dysregulated Kinases and Potential Therapy for Liver Fibrosis.
PMID: 40368138
Mol Cell Proteomics · 2025
0.80
4
Involvement of CDK11B-mediated SPDEF ubiquitination and SPDEF-mediated microRNA-448 activation in the oncogenicity and self-renewal of hepatocellular carcinoma stem cells.
PMID: 33328586
Cancer Gene Ther · 2021
0.70
5
Molecular Profile Changes in Patients with Castrate-Resistant Prostate Cancer Pre- and Post-Abiraterone/Prednisone Treatment.
PMID: 36135372
Mol Cancer Res · 2022
0.60