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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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CDYL
chromodomain Y like
Chromosome 6 · 6p25.1
NCBI Gene: 9425Ensembl: ENSG00000153046.19HGNC: HGNC:1811UniProt: Q9Y232
66PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nuclear speckprotein-macromolecule adaptor activitynucleustranscription corepressor activityneurodegenerative diseaseAlzheimer diseasemultiple sclerosisParkinson disease
✦AI Summary

CDYL (chr6 Y like) is a transcriptional corepressor that functions through multiple mechanisms to regulate gene expression and cellular processes. CDYL acts as a bridge between the transcriptional repressor REST and histone methyltransferases like G9a, facilitating chr6 modifications for gene silencing 1. Notably, CDYL functions as a crotonyl-coenzyme A hydratase that negatively regulates histone crotonylation, affecting diverse cellular pathways including DNA repair through regulation of RPA1 crotonylation 2. The protein plays critical roles in development, particularly in maintaining forebrain identity in human cortical organoids by inhibiting neuronatin expression and controlling neural stem cell fate determination 3. CDYL demonstrates significant disease relevance across multiple pathologies. In cancer, CDYL functions as a tumor suppressor, with knockdown inducing oncogenic transformation through derepression of proto-oncogenes like TrkC 1. However, circular RNAs derived from CDYL can promote cancer progression and immune evasion in hepatocellular carcinoma 4. In kidney disease, CDYL inhibition ameliorates acute kidney injury by regulating tubular pyroptosis 5. Clinically, CDYL represents a potential therapeutic target, with selective small-molecule inhibitors showing promise in treating acute kidney injury without significant side effects 5.

Sources cited
1
CDYL acts as a bridge between REST and histone methyltransferases like G9a for transcriptional repression and functions as a tumor suppressor
PMID: 19061646
2
CDYL functions as a crotonyl-coenzyme A hydratase that negatively regulates histone crotonylation and affects DNA repair through RPA1 regulation
PMID: 32201722
3
CDYL is critical for maintaining forebrain identity in human cortical organoids by inhibiting neuronatin and controlling neural stem cell fate
PMID: 39378153
4
Circular RNAs derived from CDYL can promote cancer progression and immune evasion in hepatocellular carcinoma
PMID: 40250664
5
CDYL inhibition ameliorates acute kidney injury by regulating tubular pyroptosis, and selective inhibitors show therapeutic promise
PMID: 39043969
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.43Moderate
Alzheimer diseaseOpen Targets
0.37Weak
lysosomal storage diseaseOpen Targets
0.37Weak
multiple sclerosisOpen Targets
0.37Weak
Parkinson diseaseOpen Targets
0.37Weak
connective tissue diseaseOpen Targets
0.33Weak
vertebral column disorderOpen Targets
0.27Weak
ovarian neoplasmOpen Targets
0.24Weak
familial hemolytic anemiaOpen Targets
0.24Weak
crush injuryOpen Targets
0.24Weak
malunion fractureOpen Targets
0.24Weak
placenta praeviaOpen Targets
0.21Weak
leukoplakia of penisOpen Targets
0.20Weak
aneurysmOpen Targets
0.19Weak
liver diseaseOpen Targets
0.19Weak
streptococcal infectionOpen Targets
0.19Weak
Abruptio PlacentaeOpen Targets
0.19Weak
keratoconusOpen Targets
0.18Weak
sialadenitisOpen Targets
0.18Weak
lacrimal apparatus diseaseOpen Targets
0.17Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HDAC1Protein interaction100%HDAC2Protein interaction100%EHMT2Protein interaction99%EZH2Protein interaction91%SCP2Protein interaction83%WIZProtein interaction82%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
95%
Heart
87%
Lung
70%
Ovary
58%
Liver
31%
Gene Interaction Network
Click a node to explore
CDYLHDAC1HDAC2EHMT2EZH2SCP2WIZ
PROTEIN STRUCTURE
Preparing viewer…
PDB7N27 · 1.85 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.29Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.16 [0.09–0.29]
RankingsWhere CDYL stands among ~20K protein-coding genes
  • #7,047of 20,598
    Most Researched66
  • #1,086of 17,882
    Most Constrained (LOEUF)0.29 · top 10%
Genes detectedCDYL
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Global crotonylome reveals CDYL-regulated RPA1 crotonylation in homologous recombination-mediated DNA repair.
PMID: 32201722
Sci Adv · 2020
1.00
2
Novel Truncated Peptide Derived From circCDYL Exacerbates Cardiac Hypertrophy.
PMID: 40242872
Circ Res · 2025
0.90
3
Hypoxia-induced circ-CDYL-EEF1A2 transcriptional complex drives lung metastasis of cancer stem cells from hepatocellular carcinoma.
PMID: 37852428
Cancer Lett · 2023
0.80
4
Chromodomain Y-like (CDYL) inhibition ameliorates acute kidney injury in mice by regulating tubular pyroptosis.
PMID: 39043969
Acta Pharmacol Sin · 2024
0.70
5
The chromodomain protein CDYL confers forebrain identity to human cortical organoids by inhibiting neuronatin.
PMID: 39378153
Cell Rep · 2024
0.60