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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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CELF6
CUGBP Elav-like family member 6
Chromosome 15 · 15q23
NCBI Gene: 60677Ensembl: ENSG00000140488.17HGNC: HGNC:14059UniProt: Q96J87
14PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
regulation of alternative mRNA splicing, via spliceosomemRNA bindingribonucleoprotein complexmRNA splice site recognitionneurodegenerative diseaselung cancerpheochromocytoma/paraganglioma syndrome 6Paraganglioma
✦AI Summary

CELF6 (CUGBP Elav-like family member 6) is an RNA-binding protein that regulates both alternative splicing and mRNA stability with significant roles in cellular proliferation and neural function. CELF6 mediates tissue-specific alternative splicing by activating exon inclusion in cardiac troponin T through muscle-specific splicing enhancers and promoting exon exclusion in insulin receptor pre-mRNA 1. Beyond splicing regulation, CELF6 functions as a tumor suppressor by stabilizing p21 mRNA through binding to its 3' UTR, leading to G1 phase arrest and reduced cell proliferation 2. In cancer contexts, CELF6 suppresses proliferation in triple-negative breast cancer by stabilizing FBP1 mRNA 3 and in lung cancer by downregulating immune-related genes that promote tumorigenesis 4. CELF6 protein levels are regulated through ubiquitin-proteasome degradation, with MDM2 serving as a key E3 ligase promoting its degradation 5. In the nervous system, CELF6 destabilizes synaptic gene mRNAs through 3' UTR interactions, affecting proteins like FOS and FGF13 6, and its loss impairs conditioned learning behaviors including cocaine preference and contextual fear conditioning 7. The protein is highly expressed in brain, kidney, and testis, with widespread brain expression maintained from fetal to adult stages 1.

Sources cited
1
CELF6 mediates alternative splicing of cardiac troponin T and insulin receptor, with high expression in brain, kidney, and testis
PMID: 14761971
2
CELF6 functions as tumor suppressor by stabilizing p21 mRNA and inducing G1 arrest
PMID: 31534127
3
CELF6 suppresses triple-negative breast cancer progression by stabilizing FBP1 mRNA
PMID: 32601971
4
CELF6 overexpression in lung cancer cells downregulates immune-related genes that promote tumorigenesis
PMID: 35910766
5
MDM2 E3 ligase promotes CELF6 degradation through K48-linked ubiquitination
PMID: 41120277
6
CELF6 destabilizes synaptic gene mRNAs through 3' UTR interactions, affecting FOS and FGF13 proteins
PMID: 33357440
7
CELF6 loss impairs conditioned learning behaviors including cocaine preference and fear conditioning
PMID: 31215739
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.26Weak
lung cancerOpen Targets
0.03Suggestive
ParagangliomaOpen Targets
0.03Suggestive
pheochromocytoma/paraganglioma syndrome 6Open Targets
0.03Suggestive
neoplasmOpen Targets
0.03Suggestive
colorectal carcinomaOpen Targets
0.03Suggestive
cancerOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
triple-negative breast cancerOpen Targets
0.02Suggestive
colorectal cancerOpen Targets
0.02Suggestive
autismOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
non-small cell lung carcinomaOpen Targets
0.01Suggestive
cervical cancerOpen Targets
0.00Suggestive
breast cancerOpen Targets
0.00Suggestive
myotonic dystrophyOpen Targets
0.00Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
Neoplasm of the lungOpen Targets
0.00Suggestive
neuroblastomaOpen Targets
0.00Suggestive
autism spectrum disorderOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CELF5Shared pathway100%RRM2Protein interaction80%CEBPDProtein interaction80%RRM1Protein interaction76%PUF60Shared pathway67%SRSF9Shared pathway50%
Tissue Expression6 tissues
Ovary
100%
Brain
61%
Lung
33%
Liver
22%
Bone Marrow
11%
Heart
0%
Gene Interaction Network
Click a node to explore
CELF6CELF5RRM2CEBPDRRM1PUF60SRSF9
PROTEIN STRUCTURE
Preparing viewer…
PDB2DGQ · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.08LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.80 [0.60–1.08]
RankingsWhere CELF6 stands among ~20K protein-coding genes
  • #15,823of 20,598
    Most Researched14
  • #11,008of 17,882
    Most Constrained (LOEUF)1.08
Genes detectedCELF6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
CLIP and Massively Parallel Functional Analysis of CELF6 Reveal a Role in Destabilizing Synaptic Gene mRNAs through Interaction with 3' UTR Elements.
PMID: 33357440
Cell Rep · 2020
1.00
2
RNA-binding protein CELF6 is cell cycle regulated and controls cancer cell proliferation by stabilizing p21.
PMID: 31534127
Cell Death Dis · 2019
0.90
3
RNA-binding protein CELF6 modulates transcription and splicing levels of genes associated with tumorigenesis in lung cancer A549 cells.
PMID: 35910766
PeerJ · 2022
0.80
4
MDM2 promotes CELF6 ubiquitination-dependent degradation to promote neuroblastoma cell proliferation.
PMID: 41120277
Cell Death Dis · 2025
0.70
5
The natural compound neobractatin inhibits cell proliferation mainly by regulating the RNA binding protein CELF6.
PMID: 35088780
Food Funct · 2022
0.60