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GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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SRSF9
serine and arginine rich splicing factor 9
Chromosome 12 · 12q24.31
NCBI Gene: 8683Ensembl: ENSG00000111786.11HGNC: HGNC:10791UniProt: Q13242
203PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmRNA bindingnegative regulation of mRNA splicing, via spliceosomeprotein bindingdengue diseaseneurodegenerative diseaseAbnormality of the skeletal systemneoplasm
✦AI Summary

SRSF9 is a serine/arginine-rich RNA-binding protein that functions as a modulator of alternative splicing with pleiotropic roles in disease. Mechanistically, SRSF9 regulates splicing through multiple pathways: it represses MAPT/Tau exon 10 inclusion and controls alternative splicing of target genes by recognizing RNA sequences and recruiting spliceosomal machinery 1. A distinctive feature is SRSF9's capacity to form phase-separated condensates via its RS domain, which enhances its splicing activity and is essential for its biological functions 23. Additionally, SRSF9 can interact with ADAR2 via its RRM2 domain to repress A-to-I RNA editing at brain-specific sites 4. Disease relevance spans multiple malignancies: SRSF9 promotes oral cancer by inducing oncogenic SLC37A4-S isoforms and conferring chemotherapy resistance 2, ovarian cancer progression through NUMB isoform switching 3, hepatocellular carcinoma proliferation via Wnt/cell cycle pathways 5, and glioblastoma growth by enhancing CDK1 expression 6. In cardiovascular disease, SRSF9-mediated NFATc4 splicing drives cardiac hypertrophy and heart failure 7. Conversely, SRSF9 suppresses HIV-1 production by inducing imbalanced viral mRNA splicing 8. Clinically, elevated SRSF9 expression correlates with poor prognosis in multiple cancers and represents a therapeutic target, with antisense oligonucleotides and phase separation inhibitors showing promise 235.

Sources cited
1
SRSF9 mediates NFATc4 splicing downstream of Mettl1-catalyzed m7G modification to promote cardiac hypertrophy and heart failure
PMID: 38810124
2
SRSF9 undergoes liquid-liquid phase separation via its RS domain to mediate oncogenic SLC37A4 splicing in oral cancer, promoting proliferation, metastasis, and chemotherapy resistance
PMID: 40064440
3
SRSF9 forms phase-separated condensates to promote ovarian cancer by inducing oncogenic NUMB isoform switching, antagonized by m6A RNA modification
PMID: 40773673
4
SRSF9 overexpression inhibits HIV-1 production by inducing imbalanced splicing of viral mRNAs
PMID: 36330710
5
SRSF9 is upregulated in hepatocellular carcinoma, associated with poor prognosis, and promotes proliferation and migration through Wnt and cell cycle pathway regulation
PMID: 35971121
6
SRSF9 promotes glioblastoma proliferation and migration by enhancing CDK1 transcription
PMID: 38842611
7
SRSF9 forms oncogenic condensates via liquid-liquid phase separation to regulate alternative splicing and is implicated in multiple human pathologies
PMID: 41399527
8
SRSF9 selectively represses ADAR2-mediated A-to-I editing at brain-specific sites through RRM2-domain interaction with ADAR2
PMID: 29992293
Disease Associationsⓘ20
dengue diseaseOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.29Weak
Abnormality of the skeletal systemOpen Targets
0.13Weak
neoplasmOpen Targets
0.10Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
attention deficit hyperactivity disorderOpen Targets
0.09Suggestive
cancerOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
ThrombocytopeniaOpen Targets
0.07Suggestive
attention deficit-hyperactivity disorder 8Open Targets
0.07Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.07Suggestive
intellectual disability, autosomal recessive 59Open Targets
0.07Suggestive
schizophrenia 15Open Targets
0.07Suggestive
macrothrombocytopenia, isolated, 2, autosomal dominantOpen Targets
0.07Suggestive
mathematical abilityOpen Targets
0.06Suggestive
autosomal dominant macrothrombocytopeniaOpen Targets
0.06Suggestive
thrombocytopenia 4Open Targets
0.06Suggestive
essential thrombocythemiaOpen Targets
0.05Suggestive
Beta-thalassemia - X-linked thrombocytopeniaOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SNRNP70Protein interaction99%SRPK1Protein interaction98%U2AF2Protein interaction97%HNRNPMProtein interaction97%HNRNPRProtein interaction96%HNRNPFProtein interaction95%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
73%
Lung
60%
Ovary
60%
Liver
56%
Heart
23%
Gene Interaction Network
Click a node to explore
SRSF9SNRNP70SRPK1U2AF2HNRNPMHNRNPRHNRNPF
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q13242
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.33Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.13 [0.06–0.33]
RankingsWhere SRSF9 stands among ~20K protein-coding genes
  • #2,075of 20,598
    Most Researched203 · top quartile
  • #1,361of 17,882
    Most Constrained (LOEUF)0.33 · top 10%
Genes detectedSRSF9
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
The m7G Methyltransferase Mettl1 Drives Cardiac Hypertrophy by Regulating SRSF9-Mediated Splicing of NFATc4.
PMID: 38810124
Adv Sci (Weinh) · 2024
1.00
2
SRSF9 mediates oncogenic RNA splicing of SLC37A4 via liquid-liquid phase separation to promote oral cancer progression.
PMID: 40064440
J Adv Res · 2026
0.90
3
SRSF9 Forms Phase-Separated Condensates to Promote Ovarian Cancer Progression by Inducing RNA Alternative Splicing That Is Inhibited by m6A Modification.
PMID: 40773673
Cancer Res · 2025
0.80
4
A positive feedback loop of SRSF9/USP22/ZEB1 promotes the progression of ovarian cancer.
PMID: 39530604
Cancer Biol Ther · 2024
0.72
5
Investigation of the effect of SRSF9 overexpression on HIV-1 production.
PMID: 36330710
BMB Rep · 2022
0.70