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GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HNRNPM
heterogeneous nuclear ribonucleoprotein M
Chromosome 19 · 19p13.2
NCBI Gene: 4670Ensembl: ENSG00000099783.14HGNC: HGNC:5046UniProt: P52272
426PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Highly StudiedTrending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
extracellular exosomespliceosomal complexcatalytic step 2 spliceosomeprotein domain specific bindingdengue diseaseAbnormality of the skeletal systemhypertensiongestational diabetes
✦AI Summary

HNRNPM (heterogeneous nuclear ribonucleoprotein M) is a multifunctional RNA-binding protein with primary roles in pre-mRNA splicing and transcriptome regulation. As a core splicing factor, hnRNPM binds avidly to poly(G) and poly(U) RNA sequences and participates in alternative splicing decisions through spliceosomal complex assembly 1. Beyond canonical splicing, hnRNPM functions as a guardian of transcriptome integrity by repressing cryptic splicing events at deep intronic regions, particularly at long interspersed nuclear elements (LINEs), preventing the generation of interferon-activating double-stranded RNAs 2. hnRNPM exhibits non-canonical functions independent of its splicing role. SUMOylation at lysine 17 regulates its interaction with glycolytic enzyme PFKFB3, suppressing lactate production and colorectal cancer progression 3. In cancer contexts, hnRNPM mediates alternative splicing of oncogenic transcripts like DIAPH3, driving hepatocellular carcinoma metastasis through epithelial-mesenchymal transition 1, and regulates SLC7A11 splicing to promote ferroptosis resistance in breast cancer 4. Disease relevance extends to neurodegeneration: polyglycine inclusions from expanded GGC repeats in NOTCH2NLC sequester hnRNPM, contributing to neuronal intranuclear inclusion disease pathogenesis 5. Additionally, hnRNPM coordinates host-viral interactions, regulating influenza A virus replication through species-specific mechanisms 6 and cisplatin resistance via BAX alternative splicing in osteosarcoma 7.

Sources cited
1
hnRNPM interacts with lncRNA LINC01089 to mediate DIAPH3 exon 3 skipping, driving hepatocellular carcinoma metastasis through epithelial-mesenchymal transition
PMID: 37756562
2
hnRNPM suppresses cryptic splicing at deep intronic regions containing LINEs, preventing dsRNA-mediated interferon responses and maintaining transcriptome integrity
PMID: 38815579
3
SUMOylation of hnRNPM at lysine 17 affects its interaction with PFKFB3, suppressing glycolysis and colorectal cancer tumorigenesis independently of splicing function
PMID: 39983892
4
Polyglycine inclusions from expanded NOTCH2NLC-GGC repeats sequester hnRNPM, contributing to neuronal intranuclear inclusion disease pathogenesis
PMID: 36417528
5
hnRNPM interacts with FMRP to regulate SLC7A11 alternative splicing, promoting ferroptosis resistance and breast cancer progression
PMID: 39388855
6
ERCC6 interacts with hnRNPM to regulate BAX alternative splicing and the PI3K/AKT pathway, influencing cisplatin resistance in osteosarcoma
PMID: 40476445
7
hnRNPM recruits influenza A virus ribonucleoproteins with species-specific mechanisms: human hnRNPM facilitates viral transcription while chicken hnRNPM restricts M segment splicing
PMID: 40434105
Disease Associationsⓘ20
dengue diseaseOpen Targets
0.37Weak
Abnormality of the skeletal systemOpen Targets
0.27Weak
hypertensionOpen Targets
0.16Weak
gestational diabetesOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.09Suggestive
Familial progressive cardiac conduction defectOpen Targets
0.08Suggestive
Romano-Ward syndromeOpen Targets
0.08Suggestive
catecholaminergic polymorphic ventricular tachycardiaOpen Targets
0.08Suggestive
hypertrophic cardiomyopathyOpen Targets
0.08Suggestive
Rare familial disorder with hypertrophic cardiomyopathyOpen Targets
0.08Suggestive
familial atrial fibrillationOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.08Suggestive
Idiopathic ventricular fibrillation, not Brugada typeOpen Targets
0.08Suggestive
Brugada syndromeOpen Targets
0.08Suggestive
Familial short QT syndromeOpen Targets
0.08Suggestive
Arrhythmogenic right ventricular dysplasiaOpen Targets
0.07Suggestive
atrial fibrillationOpen Targets
0.07Suggestive
colorectal cancerOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SNRPD2Protein interaction100%SNRNP70Protein interaction100%ZNF207Protein interaction100%ELAVL1Protein interaction97%FUSProtein interaction97%HNRNPA1Protein interaction97%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
77%
Brain
67%
Lung
65%
Liver
59%
Heart
36%
Gene Interaction Network
Click a node to explore
HNRNPMSNRPD2SNRNP70ZNF207ELAVL1FUSHNRNPA1
PROTEIN STRUCTURE
Preparing viewer…
PDB2OT8 · 3.10 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.40Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.22 [0.13–0.40]
RankingsWhere HNRNPM stands among ~20K protein-coding genes
  • #656of 20,598
    Most Researched426 · top 5%
  • #2,005of 17,882
    Most Constrained (LOEUF)0.40 · top quartile
Genes detectedHNRNPM
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Super Enhancer-Regulated LncRNA LINC01089 Induces Alternative Splicing of DIAPH3 to Drive Hepatocellular Carcinoma Metastasis.
PMID: 37756562
Cancer Res · 2023
1.00
2
hnRNPM protects against the dsRNA-mediated interferon response by repressing LINE-associated cryptic splicing.
PMID: 38815579
Mol Cell · 2024
0.90
3
SUMOylated hnRNPM suppresses PFKFB3 phosphorylation to regulate glycolysis and tumorigenesis.
PMID: 39983892
Cancer Lett · 2025
0.80
4
RNA-binding proteins hnRNPM and ELAVL1 promote type-I interferon induction downstream of the nucleic acid sensors cGAS and RIG-I.
PMID: 39707025
EMBO J · 2025
0.72
5
Expression of expanded GGC repeats within
PMID: 36417528
Sci Adv · 2022
0.70