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GeneE
26 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HNRNPF
heterogeneous nuclear ribonucleoprotein F
Chromosome 10 · 10q11.21
NCBI Gene: 3185Ensembl: ENSG00000169813.18HGNC: HGNC:5039UniProt: P52597
388PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
RESEARCH IMPACT
Highly StudiedTrending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmsingle-stranded RNA bindingmembraneprotein bindingneurodegenerative diseasedengue diseaseknee fractureatrial fibrillation
✦AI Summary

HNRNPF is a heterogeneous nuclear ribonucleoprotein that functions as a critical regulator of pre-mRNA processing and alternative splicing. As a component of hnRNP complexes, HNRNPF binds G-rich sequences and G-quadruplex structures in pre-mRNAs, maintaining target RNAs in an unfolded state to facilitate splicing, 5' capping, 3' polyadenylation, and RNA export 1. HNRNPF operates through RNA recognition motifs with distinct amino acid compositions that confer specificity for guanine-enriched sequences 1. Disease relevance spans multiple malignancies and inflammatory conditions. In ulcerative colitis, HNRNPF mutations are positively selected in inflamed intestinal epithelium through downregulation of pro-inflammatory IL-17 signaling 2. HNRNPF involvement extends to pediatric tumors like Ewing sarcoma and hematological malignancies including mantle cell lymphoma and acute promyelocytic leukemia 1. In lung cancer, HNRNPF facilitates exosomal trafficking of metastasis-enhancing lncRNA, promoting histone lactylation and metastatic potential 3. HNRNPF also suppresses expression of ferroptosis-promoting lactotransferrin in prostate cancer 4. Clinically, the hsa-miR-139-5p/HNRNPF regulatory axis correlates with thyroid cancer aggressiveness and modulates oncogenic signaling pathways 5, while nuclear PKM2 competes with HNRNPF at rG4 structures to regulate cancer cell migration 6. These findings establish HNRNPF as a multifunctional RNA regulator with therapeutic significance across cancer types.

Sources cited
1
As a component of hnRNP complexes, HNRNPF binds G-rich sequences and G-quadruplex structures in pre-mRNAs, maintaining target RNAs in an unfolded state to facilitate splicing, 5' capping, 3' polyadenylation, and RNA export .
PMID: 37042074
2
In ulcerative colitis, HNRNPF mutations are positively selected in inflamed intestinal epithelium through downregulation of pro-inflammatory IL-17 signaling .
PMID: 31853061
3
In lung cancer, HNRNPF facilitates exosomal trafficking of metastasis-enhancing lncRNA, promoting histone lactylation and metastatic potential .
PMID: 40022086
4
HNRNPF also suppresses expression of ferroptosis-promoting lactotransferrin in prostate cancer .
PMID: 40082405
5
Clinically, the hsa-miR-139-5p/HNRNPF regulatory axis correlates with thyroid cancer aggressiveness and modulates oncogenic signaling pathways , while nuclear PKM2 competes with HNRNPF at rG4 structures to regulate cancer cell migration .
PMID: 31403184
6
Clinically, the hsa-miR-139-5p/HNRNPF regulatory axis correlates with thyroid cancer aggressiveness and modulates oncogenic signaling pathways , while nuclear PKM2 competes with HNRNPF at rG4 structures to regulate cancer cell migration .
PMID: 39153475
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.52Moderate
dengue diseaseOpen Targets
0.37Weak
knee fractureOpen Targets
0.32Weak
atrial fibrillationOpen Targets
0.18Weak
breast cancerOpen Targets
0.10Weak
posterior cortical atrophyOpen Targets
0.08Suggestive
Mantle cell lymphomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.07Suggestive
gastric cancerOpen Targets
0.06Suggestive
cancerOpen Targets
0.04Suggestive
hypertensionOpen Targets
0.03Suggestive
Merkel cell skin cancerOpen Targets
0.03Suggestive
diabetes mellitusOpen Targets
0.02Suggestive
glioblastoma multiformeOpen Targets
0.02Suggestive
Abnormality of the skeletal systemOpen Targets
0.02Suggestive
non-small cell lung carcinomaOpen Targets
0.02Suggestive
diabetic nephropathyOpen Targets
0.02Suggestive
urinary bladder carcinomaOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
oral squamous cell carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PTBP1Protein interaction99%HNRNPKProtein interaction99%HNRNPH1Protein interaction99%HNRNPUProtein interaction97%HNRNPMProtein interaction97%HNRNPA3Protein interaction97%
Tissue Expression6 tissues
Liver
100%
Lung
89%
Bone Marrow
84%
Brain
79%
Ovary
68%
Heart
56%
Gene Interaction Network
Click a node to explore
HNRNPFPTBP1HNRNPKHNRNPH1HNRNPUHNRNPMHNRNPA3
PROTEIN STRUCTURE
Preparing viewer…
PDB3TFY · 2.75 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.23Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.07 [0.03–0.23]
RankingsWhere HNRNPF stands among ~20K protein-coding genes
  • #767of 20,598
    Most Researched388 · top 5%
  • #649of 17,882
    Most Constrained (LOEUF)0.23 · top 5%
Genes detectedHNRNPF
Sources retrieved26 papers
Response time—
📄 Sources
26▼
1
Frequent mutations that converge on the NFKBIZ pathway in ulcerative colitis.
PMID: 31853061
Nature · 2020
1.00
2
The HNRNPF/H RNA binding proteins and disease.
PMID: 37042074
Wiley Interdiscip Rev RNA · 2023
0.90
3
Nuclear PKM2 binds pre-mRNA at folded G-quadruplexes and reveals their gene regulatory role.
PMID: 39153475
Mol Cell · 2024
0.80
4
Exosomal lncRNA Mir100hg from lung cancer stem cells activates H3K14 lactylation to enhance metastatic activity in non-stem lung cancer cells.
PMID: 40022086
J Nanobiotechnology · 2025
0.70
5
LINC03047 promotes mitophagy by recruiting hnRNPF to enhance CTGF mRNA stability in hypoxic pulmonary hypertension.
PMID: 41232621
Free Radic Biol Med · 2026
0.68