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GeneE
9 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CFAP221
cilia and flagella associated protein 221
Chromosome 2 Β· 2q14.2
NCBI Gene: 200373Ensembl: ENSG00000163075.14HGNC: HGNC:33720UniProt: Q4G0U5
14PubMed Papers
21Diseases
0Drugs
5Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
sperm head-tail coupling apparatuscentrioleciliary tipciliumprimary ciliary dyskinesiaYoung syndromehemolytic anemiainflammatory bowel disease
✦AI Summary

CFAP221 (Cilia and Flagella Associated Protein 221) is essential for motile cilium assembly and function, playing a critical role in ciliary central apparatus structure and sperm flagellar development 1. The protein localizes to ciliary and flagellar axonemes, particularly in elongating sperm cells during spermatogenesis 2. CFAP221 interacts with other flagellar development proteins including CFAP74, CFAP194, CFAP246, and CFAP297, suggesting coordinated regulation of ciliary/flagellar biogenesis 2. Pathogenic variants in CFAP221 cause primary ciliary dyskinesia (PCD), a rare genetic disorder characterized by impaired mucociliary clearance 3. Unlike typical PCD, CFAP221 deficiency presents as a mild form with normal ciliary ultrastructure and beat frequency, but manifests aberrant circular ciliary motion and reduced beat frequency 1. Additionally, biallelic CFAP221 variants cause asthenoteratozoospermia with severely malformed sperm flagella and impaired male fertility, though intracytoplasmic sperm injection can enable successful reproduction 2. CFAP221 deficiency is also associated with congenital hydrocephalus in mouse models, suggesting broader neurological complications 4. Clinical recognition of CFAP221-related disease requires genetic testing, as standard diagnostic algorithms may miss this atypical PCD presentation 5.

Sources cited
1
CFAP221 role in PCD pathogenesis with subtle central apparatus abnormalities and reduced ciliary beat frequency; RNAi knockdown impairs ciliary function
PMID: 40250778
2
CFAP221 pathogenic variants cause asthenoteratozoospermia with flagellar defects; protein localizes to flagella during spermatogenesis and interacts with flagellar development proteins
PMID: 40272718
3
CFAP221 loss-of-function variants cause PCD with reduced beat frequency and aberrant circular ciliary beating pattern despite normal ciliary structure
PMID: 31636325
4
CFAP221 identified as known PCD gene with C1d-defective primary ciliary dyskinesia; genetic testing needed as condition evades standard diagnostic algorithm
PMID: 39362668
5
CFAP221-deficient mouse models develop hydrocephalus with strain-dependent severity, linked to motile cilia dysfunction
PMID: 30190587
6
CFAP221 interacts with CFAP119 in flagellar development; predicted protein interactions relevant to sperm flagella formation
PMID: 40759592
7
CFAP221 compound heterozygous variants cause PCD presenting with obstructive azoospermia, sinusitis, and bronchiectasis
PMID: 38960684
8
CFAP221 expression downregulated during RSV infection via CX3CR1 engagement, affecting ciliated cell morphology
PMID: 33731455
Disease Associationsβ“˜21
primary ciliary dyskinesiaOpen Targets
0.51Moderate
Young syndromeOpen Targets
0.47Moderate
hemolytic anemiaOpen Targets
0.27Weak
inflammatory bowel diseaseOpen Targets
0.21Weak
injuryOpen Targets
0.19Weak
type 2 diabetes mellitusOpen Targets
0.16Weak
Genetic developmental defect of the eyeOpen Targets
0.09Suggestive
nasopharyngeal carcinomaOpen Targets
0.05Suggestive
Abnormal sperm morphologyOpen Targets
0.01Suggestive
male infertilityOpen Targets
0.01Suggestive
HydrocephalusOpen Targets
0.01Suggestive
squamous cell carcinomaOpen Targets
0.01Suggestive
Crohn's diseaseOpen Targets
0.01Suggestive
pneumococcal infectionOpen Targets
0.01Suggestive
congenital primary aphakiaOpen Targets
0.00Suggestive
infertilityOpen Targets
0.00Suggestive
bronchiectasisOpen Targets
0.00Suggestive
non-alcoholic steatohepatitisOpen Targets
0.00Suggestive
azoospermiaOpen Targets
0.00Suggestive
sinusitisOpen Targets
0.00Suggestive
Ciliary dyskinesia, primary, 55UniProt
Pathogenic Variants5
GRCh38/hg38 2q14.2(chr2:119624023-119642209)x1Likely pathogenic
Primary ciliary dyskinesia
β˜…β˜†β˜†β˜†2026
NM_001271049.2(CFAP221):c.1641dup (p.Asn548fs)Likely pathogenic
Young syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 548
NM_001271049.2(CFAP221):c.2303_2307del (p.Leu768fs)Pathogenic
Primary ciliary dyskinesia|Young syndrome
β˜†β˜†β˜†β˜†2025β†’ Residue 768
NM_001271049.2(CFAP221):c.2318+1G>APathogenic
Primary ciliary dyskinesia|Young syndrome
β˜†β˜†β˜†β˜†2025
NM_001271049.2(CFAP221):c.1466_1469del (p.Lys489fs)Pathogenic
Young syndrome
β˜†β˜†β˜†β˜†2025β†’ Residue 489
View on ClinVar β†—
Related Genes
CALML4Protein interaction100%CALML5Protein interaction100%CALML3Protein interaction100%CALML6Protein interaction100%WDR93Protein interaction87%LRGUKProtein interaction85%
Tissue Expression6 tissues
Lung
100%
Liver
59%
Brain
56%
Heart
32%
Ovary
11%
Bone Marrow
1%
Gene Interaction Network
Click a node to explore
CFAP221CALML4CALML5CALML3CALML6WDR93LRGUK
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q4G0U5
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.10LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.91 [0.76–1.10]
RankingsWhere CFAP221 stands among ~20K protein-coding genes
  • #15,824of 20,598
    Most Researched14
  • #3,646of 5,498
    Most Pathogenic Variants5
  • #11,265of 17,882
    Most Constrained (LOEUF)1.10
Genes detectedCFAP221
Sources retrieved9 papers
Response timeβ€”
πŸ“„ Sources
9β–Ό
1
Pathogenic variants in
PMID: 39362668
Eur Respir J Β· 2024
1.00
2
A novel pathogenic variant of CFAP221 is a cause of a mild form of primary ciliary dyskinesia.
PMID: 40250778
Biochim Biophys Acta Mol Basis Dis Β· 2025
0.89
3
Identification of a Novel Biallelic
PMID: 40759592
World J Mens Health Β· 2026
0.78
4
Establishing the causative link between CFAP221 variants and asthenoteratozoospermia in humans.
PMID: 40272718
J Assist Reprod Genet Β· 2025
0.67
5
Strain-specific differences in brain gene expression in a hydrocephalic mouse model with motile cilia dysfunction.
PMID: 30190587
Sci Rep Β· 2018
0.56