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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CFAP410
cilia and flagella associated protein 410
Chromosome 21 Β· 21q22.3
NCBI Gene: 755Ensembl: ENSG00000160226.16HGNC: HGNC:1260UniProt: O43822
39PubMed Papers
22Diseases
0Drugs
47Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingcytoplasmmitochondrioncytosolaxial spondylometaphyseal dysplasiaretinal dystrophy with or without macular staphylomaamyotrophic lateral sclerosisRetinal dystrophy
✦AI Summary

CFAP410 is a ciliary basal body protein essential for cilia biogenesis and maintenance 1. The protein adopts a bimodular architecture with an N-terminal leucine-rich repeat domain and C-terminal domain, with a conserved surface patch mediating binding interactions 2. Beyond ciliogenesis, CFAP410 regulates cell morphology and cytoskeletal organization [UniProt:21834987] and participates in DNA damage repair [UniProt:26290490]. CFAP410 dysfunction causes ciliopathies with predominantly retinal phenotypes. Biallelic variants cause early-onset non-syndromic retinal degeneration presenting as cone-rod or cone-only dystrophy, characterized by reduced visual acuity, photophobia, and distinctive double hyperautofluorescence rings on imaging 345. Approximately 22% of patients present with skeletal abnormalities (axial spondylometaphyseal dysplasia), particularly those with variants in conserved leucine-rich regions 4. CFAP410 variants have also been identified in amyotrophic lateral sclerosis patients 6. Disease mechanisms involve structural destabilization from point mutations disrupting protein folding and partner interactions 2, as well as splicing defects from intronic variants 3. The genotype-phenotype correlation remains unclear, with identical variants producing variable phenotypic severity 37, suggesting modifier effects or allelic heterogeneity in CFAP410-associated ciliopathies.

Sources cited
1
CFAP410 variants cause early-onset non-syndromic retinal degeneration with both coding and deep-intronic splicing variants
PMID: 39516462
2
CFAP410 identified as ciliogenesis gene through siRNA-based functional genomics screen
PMID: 26167768
3
CFAP410 variants cause cone-rod dystrophy and axial spondylometaphyseal dysplasia with disease severity correlating to leucine-rich region mutations
PMID: 40246852
4
CFAP410 variants can cause non-syndromic cone-only degeneration, expanding phenotypic spectrum
PMID: 39232248
5
CFAP410 rare splicing variants identified in amyotrophic lateral sclerosis patients
PMID: 39852553
6
CFAP410 has bimodular architecture with disease-causing mutations destabilizing protein structure and partner interactions
PMID: 40018707
7
CFAP410-related retinopathy presents with distinctive double hyperautofluorescence rings and posterior staphyloma
PMID: 38153748
8
CFAP410 variants associated with retinitis pigmentosa can co-occur with other genetic conditions
PMID: 40044632
Disease Associationsβ“˜22
axial spondylometaphyseal dysplasiaOpen Targets
0.75Strong
retinal dystrophy with or without macular staphylomaOpen Targets
0.73Strong
amyotrophic lateral sclerosisOpen Targets
0.57Moderate
Retinal dystrophyOpen Targets
0.54Moderate
Cone rod dystrophyOpen Targets
0.51Moderate
cone-rod dystrophyOpen Targets
0.51Moderate
retinitis pigmentosaOpen Targets
0.48Moderate
Rod-cone dystrophyOpen Targets
0.37Weak
Leber congenital amaurosisOpen Targets
0.33Weak
atrial fibrillationOpen Targets
0.31Weak
cone dystrophyOpen Targets
0.26Weak
genetic disorderOpen Targets
0.17Weak
Jeune syndromeOpen Targets
0.03Suggestive
cancerOpen Targets
0.02Suggestive
ciliopathyOpen Targets
0.02Suggestive
retinal degenerationOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
retinopathyOpen Targets
0.02Suggestive
achalasia-alacrima syndromeOpen Targets
0.02Suggestive
depressive disorderOpen Targets
0.02Suggestive
Retinal dystrophy with or without macular staphylomaUniProt
Spondylometaphyseal dysplasia, axialUniProt
Pathogenic Variants47
NM_004928.3(CFAP410):c.33_34insAGCTGCACAGCGTGCA (p.Ala12fs)Pathogenic
Retinitis pigmentosa|Retinal dystrophy|not provided|CFAP410-related disorder|Axial spondylometaphyseal dysplasia;Retinal dystrophy with or without macular staphyloma|Axial spondylometaphyseal dysplasia
β˜…β˜…β˜†β˜†2026β†’ Residue 12
NM_004928.3(CFAP410):c.643-1G>CPathogenic
Retinitis pigmentosa|Axial spondylometaphyseal dysplasia
β˜…β˜…β˜†β˜†2026
NM_004928.3(CFAP410):c.642+2T>CPathogenic
Axial spondylometaphyseal dysplasia
β˜…β˜…β˜†β˜†2026
NM_004928.3(CFAP410):c.218G>C (p.Arg73Pro)Pathogenic
Axial spondylometaphyseal dysplasia|Retinal dystrophy|not provided|Retinitis pigmentosa|Cone dystrophy|Retinal dystrophy with or without macular staphyloma|CFAP410-related disorder|Axial spondylometaphyseal dysplasia;Retinal dystrophy with or without macular staphyloma|Retinal disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 73
NM_004928.3(CFAP410):c.347C>T (p.Pro116Leu)Pathogenic
Axial spondylometaphyseal dysplasia|not provided|Retinal dystrophy with or without macular staphyloma
β˜…β˜…β˜†β˜†2025β†’ Residue 116
NM_004928.3(CFAP410):c.46G>T (p.Glu16Ter)Pathogenic
not provided|Axial spondylometaphyseal dysplasia
β˜…β˜…β˜†β˜†2025β†’ Residue 16
NM_004928.3(CFAP410):c.493del (p.Ser165fs)Pathogenic
Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 165
NM_004928.3(CFAP410):c.96+1G>TPathogenic
Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025
NM_004928.3(CFAP410):c.355C>T (p.Gln119Ter)Pathogenic
not provided|Retinal dystrophy with or without macular staphyloma
β˜…β˜…β˜†β˜†2025β†’ Residue 119
NM_004928.3(CFAP410):c.340_351dup (p.Thr114_Arg117dup)Pathogenic
not provided|Retinal dystrophy with or without macular staphyloma
β˜…β˜…β˜†β˜†2025β†’ Residue 114
NM_004928.3(CFAP410):c.331G>A (p.Val111Met)Pathogenic
Axial spondylometaphyseal dysplasia|Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 111
NM_004928.3(CFAP410):c.643-23A>TPathogenic
Axial spondylometaphyseal dysplasia
β˜…β˜…β˜†β˜†2024
NM_004928.3(CFAP410):c.443_444del (p.Glu148fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 148
NM_004928.3(CFAP410):c.96+1G>APathogenic
not provided|Retinal dystrophy with or without macular staphyloma|Retinal dystrophy
β˜…β˜…β˜†β˜†2024
NM_004928.3(CFAP410):c.441_444del (p.Glu148fs)Pathogenic
not provided|Retinal dystrophy with or without macular staphyloma|Retinal dystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 148
NM_004928.3(CFAP410):c.286G>A (p.Glu96Lys)Pathogenic
not provided|See cases|Retinal dystrophy with or without macular staphyloma
β˜…β˜…β˜†β˜†2024β†’ Residue 96
NM_004928.3(CFAP410):c.195_196del (p.Ser65fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 65
NM_004928.3(CFAP410):c.171_178del (p.Ser59fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 59
NM_004928.3(CFAP410):c.526del (p.Asp176fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 176
NM_004928.3(CFAP410):c.278G>A (p.Trp93Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 93
View on ClinVar β†—
Related Genes
ACTL10Shared pathway100%ACTRT2Shared pathway100%ACTRT3Shared pathway100%SH3BGRL3Shared pathway100%NAA25Shared pathway100%ACTR10Shared pathway100%
Tissue Expression6 tissues
Ovary
100%
Liver
85%
Lung
71%
Bone Marrow
69%
Brain
45%
Heart
22%
Gene Interaction Network
Click a node to explore
CFAP410ACTL10ACTRT2ACTRT3SH3BGRL3NAA25ACTR10
PROTEIN STRUCTURE
Preparing viewer…
PDB8AXR Β· 1.50 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.45LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.97 [0.66–1.45]
RankingsWhere CFAP410 stands among ~20K protein-coding genes
  • #10,293of 20,598
    Most Researched39
  • #1,391of 5,498
    Most Pathogenic Variants47
  • #14,880of 17,882
    Most Constrained (LOEUF)1.45
Genes detectedCFAP410
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Coding and non-coding variants in the ciliopathy gene CFAP410 cause early-onset non-syndromic retinal degeneration.
PMID: 39516462
NPJ Genom Med Β· 2024
1.00
2
An siRNA-based functional genomics screen for theΒ identification of regulators of ciliogenesis and ciliopathyΒ genes.
PMID: 26167768
Nat Cell Biol Β· 2015
0.90
3
Variants in CFAP410 cause a range of retinal and skeletal phenotypes.
PMID: 40246852
NPJ Genom Med Β· 2025
0.80
4
Expanding the genotypic and phenotypic spectra with a novel variant in the ciliopathy gene,
PMID: 39232248
Ophthalmic Genet Β· 2024
0.70
5
Deep learning analyses of splicing variants identify the link of PCP4 with amyotrophic lateral sclerosis.
PMID: 39852553
Brain Β· 2025
0.60