HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CFAP44
cilia and flagella associated protein 44
Chromosome 3 Β· 3q13.2
NCBI Gene: 55779Ensembl: ENSG00000206530.11HGNC: HGNC:25631UniProt: Q96MT7
22PubMed Papers
21Diseases
0Drugs
15Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingpeptidase activitysperm axoneme assemblymicrotubule cytoskeleton organizationspermatogenic failure 20non-syndromic male infertility due to sperm motility disordertype 2 diabetes mellitusalcohol drinking
✦AI Summary

CFAP44 (cilia and flagella associated protein 44) is a flagellar protein essential for sperm axoneme organization and function 1. Located between doublet microtubules 5-6 and the paraflagellar rod 1, CFAP44 possesses peptidase activity and participates in microtubule cytoskeleton organization through protein-protein interactions 2. The protein regulates cellular processes including microtubule formation via cleavage of Ξ²-tubulin and the bacterial homolog FtsZ 2. Biallelic mutations in CFAP44 cause multiple morphological abnormalities of the sperm flagella (MMAF), characterized by absent, short, coiled, or bent flagella that severely impair sperm motility 34. CRISPR/Cas9-generated Cfap44-deficient male mice exhibit MMAF phenotypes and infertility, while females remain fertile, confirming testis-specific functional requirements 4. Reduced CFAP44 expression correlates with asthenozoospermia and terato-asthenozoospermia, with positive associations between CFAP44 levels and normal sperm morphology and motility 56. Environmental insults like fluoride exposure downregulate CFAP44 expression, disrupting the "9+2" microtubule axonemal structure 7. Sperm from Cfap44-deficient males show minimal developmental impairment when used for intracytoplasmic sperm injection 8, representing the primary treatment option for CFAP44-associated male infertility.

Sources cited
1
CFAP44 mutations cause male infertility with severe sperm flagellar disorganization; protein localized between doublet microtubules 5-6 and paraflagellar rod
PMID: 29449551
2
Reduced CFAP44 expression correlates with asthenozoospermia and terato-asthenozoospermia; positive correlation with sperm motility and morphology
PMID: 35470451
3
Biallelic CFAP44 mutations cause MMAF with multiple frameshift and point mutations identified in patients
PMID: 29277146
4
CFAP44 mRNA expression reduced in asthenozoospermic patients; involved in regulating sperm motility
PMID: 35886074
5
Homozygous CFAP44 mutations cause MMAF; Cfap44-deficient male mice infertile with flagellar abnormalities; females fertile
PMID: 28552195
6
CFAP44 possesses peptidase activity; cleaves Ξ²-tubulin and FtsZ; regulates microtubule formation and cellular trafficking
PMID: 28887034
7
Cfap44-deficient sperm show minimal nuclear defects and lowest developmental failure rates among tested MMAF genes
PMID: 40070084
8
Fluoride exposure downregulates CFAP44 mRNA and protein expression, disrupting sperm flagellar axoneme structure
PMID: 31901658
Disease Associationsβ“˜21
spermatogenic failure 20Open Targets
0.67Moderate
non-syndromic male infertility due to sperm motility disorderOpen Targets
0.37Weak
type 2 diabetes mellitusOpen Targets
0.31Weak
alcohol drinkingOpen Targets
0.26Weak
genetic disorderOpen Targets
0.19Weak
prostate carcinomaOpen Targets
0.16Weak
azoospermiaOpen Targets
0.11Weak
spermatogenic failure 72Open Targets
0.10Suggestive
spermatogenic failure 18Open Targets
0.10Suggestive
spermatogenic failure 27Open Targets
0.10Suggestive
spermatogenic failure 46Open Targets
0.10Suggestive
spermatogenic failure, X-linked, 5Open Targets
0.10Suggestive
spermatogenic failure 19Open Targets
0.10Suggestive
spermatogenic failure 43Open Targets
0.10Suggestive
spermatogenic failure 45Open Targets
0.10Suggestive
spermatogenic failure 49Open Targets
0.10Suggestive
spermatogenic failure 82Open Targets
0.10Suggestive
spermatogenic failure 65Open Targets
0.10Suggestive
spermatogenic failure 78Open Targets
0.10Suggestive
spermatogenic failure 93Open Targets
0.10Suggestive
Spermatogenic failure 20UniProt
Pathogenic Variants15
NM_001164496.2(CFAP44):c.1387G>T (p.Glu463Ter)Pathogenic
Spermatogenic failure 20|CFAP44-related disorder
β˜…β˜…β˜†β˜†2024β†’ Residue 463
NM_001164496.2(CFAP44):c.1303G>T (p.Gly435Ter)Likely pathogenic
Spermatogenic failure 20
β˜…β˜†β˜†β˜†2024β†’ Residue 435
NM_001164496.2(CFAP44):c.408-2A>TLikely pathogenic
Spermatogenic failure 20
β˜…β˜†β˜†β˜†2023
NM_001164496.2(CFAP44):c.2616del (p.Leu873fs)Likely pathogenic
CFAP44-related disorder
β˜…β˜†β˜†β˜†2023β†’ Residue 873
NM_001164496.2(CFAP44):c.5078-2A>GLikely pathogenic
Spermatogenic failure 20
β˜…β˜†β˜†β˜†2022
NM_001164496.2(CFAP44):c.259C>T (p.Gln87Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 87
NM_001164496.2(CFAP44):c.535C>T (p.Arg179Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 179
NM_001164496.2(CFAP44):c.1170+1G>APathogenic
not provided
β˜…β˜†β˜†β˜†2020
NM_001164496.2(CFAP44):c.670C>T (p.Arg224Ter)Likely pathogenic
Spermatogenic failure 20
β˜…β˜†β˜†β˜†β†’ Residue 224
NM_001164496.2(CFAP44):c.5540_5541dup (p.Glu1848fs)Likely pathogenic
CFAP44-related disorder
β˜†β˜†β˜†β˜†2024β†’ Residue 1848
NM_001164496.2(CFAP44):c.1769T>A (p.Leu590Gln)Pathogenic
Spermatogenic failure 20
β˜†β˜†β˜†β˜†2019β†’ Residue 590
NC_000003.12:g.113358867_113358876delPathogenic
Spermatogenic failure 20
β˜†β˜†β˜†β˜†2019
NM_001164496.2(CFAP44):c.2005_2006del (p.Met669fs)Pathogenic
Spermatogenic failure 20
β˜†β˜†β˜†β˜†2019β†’ Residue 669
NM_001164496.2(CFAP44):c.3175C>T (p.Arg1059Ter)Pathogenic
Spermatogenic failure 20
β˜†β˜†β˜†β˜†2018β†’ Residue 1059
NM_001164496.2(CFAP44):c.2818dup (p.Glu940fs)Pathogenic
Spermatogenic failure 20
β˜†β˜†β˜†β˜†2018β†’ Residue 940
View on ClinVar β†—
Related Genes
QRICH2Protein interaction81%CFAP70Protein interaction72%TPGS1Shared pathway67%DNAH1Protein interaction63%CFAP69Protein interaction57%ZMYND12Shared pathway50%
Tissue Expression6 tissues
Ovary
100%
Liver
69%
Bone Marrow
68%
Lung
55%
Brain
20%
Heart
18%
Gene Interaction Network
Click a node to explore
CFAP44QRICH2CFAP70TPGS1DNAH1CFAP69ZMYND12
PROTEIN STRUCTURE
Preparing viewer…
PDB8J07 Β· 4.10 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.70LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.60 [0.51–0.70]
RankingsWhere CFAP44 stands among ~20K protein-coding genes
  • #13,619of 20,598
    Most Researched22
  • #2,486of 5,498
    Most Pathogenic Variants15
  • #5,298of 17,882
    Most Constrained (LOEUF)0.70
Genes detectedCFAP44
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Mutations in CFAP43 and CFAP44 cause male infertility and flagellum defects in Trypanosoma and human.
PMID: 29449551
Nat Commun Β· 2018
1.00
2
Reduced expression of CFAP44 and CFAP44-AS1 may affect sperm motility and morphology.
PMID: 35470451
Andrologia Β· 2022
0.90
3
Novel Mutations in CFAP44 and CFAP43 Cause Multiple Morphological Abnormalities of the Sperm Flagella (MMAF).
PMID: 29277146
Reprod Sci Β· 2019
0.80
4
Further Insights on RNA Expression and Sperm Motility.
PMID: 35886074
Genes (Basel) Β· 2022
0.70
5
Biallelic Mutations in CFAP43 and CFAP44 Cause Male Infertility with Multiple Morphological Abnormalities of the Sperm Flagella.
PMID: 28552195
Am J Hum Genet Β· 2017
0.60