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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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CFAP53
cilia and flagella associated protein 53
Chromosome 18 Β· 18q21.1
NCBI Gene: 220136Ensembl: ENSG00000172361.7HGNC: HGNC:26530UniProt: Q96M91
17PubMed Papers
21Diseases
0Drugs
12Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingspindle poledetermination of left/right symmetryciliary transition zoneHeterotaxiavisceral heterotaxyDextrocardiaHeterotaxy
✦AI Summary

CFAP53 (cilia and flagella associated protein 53) is a microtubule inner protein essential for motile cilia and flagella function. The protein localizes to axonemal microtubules in cilia where it regulates motility patterns of both 9+0 and 9+2 motile cilia through differential recruitment of axonemal dynein components 1. CFAP53 is required for centriolar satellite integrity, non-motile cilium assembly, and motile cilium formation 2. Through its role in cilia beating, CFAP53 is crucial for establishing left-right organ asymmetry during embryonic development 3. Loss-of-function studies in zebrafish demonstrate that cfap53 is specifically required for cilia rotation in Kupffer's vesicle, the laterality organ, providing a mechanism for proper left-right patterning 3. Additionally, CFAP53 plays an unexpected role in cytokinesis by regulating RhoA protein levels and localizing to the contractile ring during cell division 4. Clinically, homozygous pathogenic variants in CFAP53 cause heterotaxy and visceral laterality defects, including dextrocardia and situs inversus 56. The protein is also essential for sperm flagellum function and male fertility, with altered expression levels observed in asthenozoospermic men 7.

Sources cited
1
CFAP53 is a microtubule inner protein that regulates motility patterns of motile cilia through dynein component recruitment
PMID: 36191189
2
CFAP53 is required for centriolar satellite integrity, non-motile cilium assembly, and motile cilium formation
PMID: 26538025
3
CFAP53 is crucial for left-right organ asymmetry and specifically required for cilia rotation in the zebrafish laterality organ
PMID: 26531781
4
CFAP53 plays a role in cytokinesis by regulating RhoA protein levels and localizing to the contractile ring
PMID: 39479942
5
Homozygous pathogenic variants in CFAP53 cause heterotaxy and laterality defects
PMID: 34215651
6
CFAP53 variants cause situs inversus and other laterality defects in human fetuses
PMID: 37041101
7
CFAP53 is essential for sperm flagellum function with altered expression in asthenozoospermic men
PMID: 41759193
Disease Associationsβ“˜21
HeterotaxiaOpen Targets
0.69Moderate
visceral heterotaxyOpen Targets
0.53Moderate
DextrocardiaOpen Targets
0.45Moderate
HeterotaxyOpen Targets
0.40Weak
Situs inversus totalisOpen Targets
0.37Weak
Intestinal malrotationOpen Targets
0.37Weak
transposition of the great arteriesOpen Targets
0.37Weak
genetic disorderOpen Targets
0.19Weak
hypoplastic left heart syndromeOpen Targets
0.11Weak
azoospermiaOpen Targets
0.07Suggestive
partial chromosome Y deletionOpen Targets
0.05Suggestive
spermatogenic failure 65Open Targets
0.05Suggestive
spermatogenic failure 84Open Targets
0.05Suggestive
spermatogenic failure 93Open Targets
0.05Suggestive
spermatogenic failure 54Open Targets
0.05Suggestive
fungal lung infectious diseaseOpen Targets
0.05Suggestive
spermatogenic failure, X-linked, 3Open Targets
0.05Suggestive
spermatogenic failure 56Open Targets
0.05Suggestive
spermatogenic failure 92Open Targets
0.05Suggestive
spermatogenic failure 94Open Targets
0.05Suggestive
Heterotaxy, visceral, 6, autosomalUniProt
Pathogenic Variants12
NM_145020.5(CFAP53):c.474-2A>GLikely pathogenic
Heterotaxy, visceral, 6, autosomal
β˜…β˜†β˜†β˜†2025
NM_145020.5(CFAP53):c.996+1G>CLikely pathogenic
Heterotaxy, visceral, 6, autosomal
β˜…β˜†β˜†β˜†2025
NM_145020.5(CFAP53):c.1213+1G>ALikely pathogenic
Heterotaxy, visceral, 6, autosomal
β˜…β˜†β˜†β˜†2024
NM_145020.5(CFAP53):c.1214-1G>ALikely pathogenic
Heterotaxy, visceral, 6, autosomal
β˜…β˜†β˜†β˜†2024
NM_145020.5(CFAP53):c.1004_1008del (p.Met335fs)Pathogenic
Heterotaxy, visceral, 6, autosomal
β˜…β˜†β˜†β˜†2023β†’ Residue 335
NM_145020.5(CFAP53):c.877C>T (p.Gln293Ter)Likely pathogenic
Heterotaxy, visceral, 6, autosomal
β˜…β˜†β˜†β˜†2022β†’ Residue 293
NM_145020.5(CFAP53):c.778-2A>TPathogenic
Heterotaxy|not provided
β˜…β˜†β˜†β˜†2022
NM_145020.5(CFAP53):c.1144G>T (p.Glu382Ter)Likely pathogenic
Heterotaxy, visceral, 6, autosomal
β˜…β˜†β˜†β˜†2022β†’ Residue 382
NM_145020.5(CFAP53):c.286del (p.Glu96fs)Likely pathogenic
CFAP53-related disorder
β˜†β˜†β˜†β˜†2024β†’ Residue 96
NM_145020.5(CFAP53):c.777G>T (p.Val259=)Likely pathogenic
Heterotaxy
β˜†β˜†β˜†β˜†2021β†’ Residue 259
NM_145020.5(CFAP53):c.301_473+1delLikely pathogenic
Dextrocardia
β˜†β˜†β˜†β˜†2015
NM_145020.5(CFAP53):c.121C>T (p.Arg41Ter)Pathogenic
Heterotaxy, visceral, 6, autosomal
β˜†β˜†β˜†β˜†2015β†’ Residue 41
View on ClinVar β†—
Related Genes
TUBB4BProtein interaction89%SPACA9Protein interaction89%CFAP45Protein interaction89%RIBC2Protein interaction89%SPAG8Protein interaction89%TEKT2Protein interaction89%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
CFAP53TUBB4BSPACA9CFAP45RIBC2SPAG8TEKT2
PROTEIN STRUCTURE
Preparing viewer…
PDB7UNG Β· 3.60 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.28LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.02 [0.82–1.28]
RankingsWhere CFAP53 stands among ~20K protein-coding genes
  • #14,949of 20,598
    Most Researched17
  • #2,718of 5,498
    Most Pathogenic Variants12
  • #13,511of 17,882
    Most Constrained (LOEUF)1.28
Genes detectedCFAP53
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Whole-exome sequencing reveals a monogenic cause in 56% of individuals with laterality disorders and associated congenital heart defects.
PMID: 34215651
J Med Genet Β· 2022
1.00
2
Prenatal
PMID: 37041101
J Matern Fetal Neonatal Med Β· 2023
0.90
3
A Zebrafish Loss-of-Function Model for Human CFAP53 Mutations Reveals Its Specific Role in Laterality Organ Function.
PMID: 26531781
Hum Mutat Β· 2016
0.80
4
The Heterotaxy Gene CCDC11 Is Important for Cytokinesis via RhoA Regulation.
PMID: 39479942
Cytoskeleton (Hoboken) Β· 2025
0.70
5
Whole genome sequencing in the diagnosis of primary ciliary dyskinesia.
PMID: 34556108
BMC Med Genomics Β· 2021
0.60