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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CHST6
carbohydrate sulfotransferase 6
Chromosome 16 Β· 16q23.1
NCBI Gene: 4166Ensembl: ENSG00000183196.11HGNC: HGNC:6938UniProt: Q9GZX3
59PubMed Papers
21Diseases
0Drugs
53Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
N-acetylglucosamine 6-O-sulfotransferase activitykeratan sulfotransferase activityN-acetylglucosamine metabolic processsulfur compound metabolic processmacular corneal dystrophyaortic stenosisgenetic disorderalopecia areata
✦AI Summary

CHST6 encodes a sulfotransferase enzyme that catalyzes the transfer of sulfate groups to keratan sulfate proteoglycans, specifically targeting position 6 of N-acetylglucosamine residues 1. The enzyme is primarily expressed in corneal stromal keratocytes and plays a crucial role in keratan sulfate biosynthesis within the corneal stroma 1. CHST6 dysfunction leads to macular corneal dystrophy (MCD), an autosomal recessive disorder characterized by accumulation of unsulfated keratan sulfate proteoglycans forming abnormal deposits in the corneal stroma and endothelium 2. These deposits progressively impair corneal transparency and visual acuity 2. MCD exhibits significant genetic heterogeneity, with over 189 mutations identified worldwide, most being missense mutations clustered in functionally important protein regions 3. Different mutation types correlate with distinct immunophenotypes: truncation mutations cause severe phenotypes with complete loss of keratan sulfate expression, while missense mutations result in milder presentations 4. Recent research using patient-derived iPSCs reveals that CHST6 mutations also impair autophagy and mitochondrial function in corneal stromal cells, suggesting broader cellular dysfunction beyond keratan sulfate metabolism 5. Treatment currently relies on corneal transplantation, though emerging therapies targeting autophagy dysfunction show promise 5.

Sources cited
1
CHST6 encodes a sulfotransferase that transfers sulfate to keratan sulfate proteoglycans and is primarily expressed in corneal stromal keratocytes
PMID: 20537995
2
CHST6 mutations cause macular corneal dystrophy with abnormal proteoglycan accumulation leading to corneal opacity
PMID: 33171054
3
Over 189 CHST6 mutations identified worldwide with clustering in functionally important regions
PMID: 32472422
4
Different mutation types correlate with distinct disease severity and immunophenotypes
PMID: 39959172
5
CHST6 mutations impair autophagy and mitochondrial function beyond keratan sulfate metabolism
PMID: 39639354
Disease Associationsβ“˜21
macular corneal dystrophyOpen Targets
0.87Strong
aortic stenosisOpen Targets
0.32Weak
genetic disorderOpen Targets
0.19Weak
alopecia areataOpen Targets
0.13Weak
Fuchs endothelial corneal dystrophyOpen Targets
0.09Suggestive
medical procedureOpen Targets
0.09Suggestive
early-onset non-syndromic cataractOpen Targets
0.08Suggestive
aneurysmOpen Targets
0.07Suggestive
posterior polymorphous corneal dystrophyOpen Targets
0.07Suggestive
congenital hereditary endothelial dystrophy of corneaOpen Targets
0.07Suggestive
Dupuytren ContractureOpen Targets
0.07Suggestive
X-linked endothelial corneal dystrophyOpen Targets
0.07Suggestive
lattice corneal dystrophy type IOpen Targets
0.07Suggestive
X-linked corneal dermoidOpen Targets
0.07Suggestive
Lisch epithelial corneal dystrophyOpen Targets
0.07Suggestive
granular corneal dystrophy type IOpen Targets
0.07Suggestive
Cataract-microcornea syndromeOpen Targets
0.07Suggestive
autosomal dominant keratitisOpen Targets
0.06Suggestive
Familial ocular anterior segment mesenchymal dysgenesisOpen Targets
0.06Suggestive
Schnyder corneal dystrophyOpen Targets
0.06Suggestive
Macular dystrophy, cornealUniProt
Pathogenic Variants53
NM_021615.5(CHST6):c.304T>G (p.Cys102Gly)Pathogenic
Macular corneal dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 102
NM_021615.5(CHST6):c.1A>T (p.Met1Leu)Pathogenic
not provided|Macular corneal dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 1
NM_021615.5(CHST6):c.599T>G (p.Leu200Arg)Pathogenic
Macular corneal dystrophy|Macular corneal dystrophy, type II|not provided|CHST6-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 200
NM_021615.5(CHST6):c.172C>T (p.Gln58Ter)Pathogenic
not provided|Macular corneal dystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 58
NM_021615.5(CHST6):c.632G>A (p.Arg211Gln)Pathogenic
Macular corneal dystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 211
NM_021615.5(CHST6):c.158C>T (p.Ser53Leu)Pathogenic
Macular corneal dystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 53
NM_021615.5(CHST6):c.805del (p.Arg269fs)Pathogenic
Macular corneal dystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 269
NM_021615.5(CHST6):c.379C>T (p.Arg127Cys)Pathogenic
Macular corneal dystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 127
NM_021615.5(CHST6):c.418C>T (p.Arg140Ter)Pathogenic
Macular corneal dystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 140
NM_021615.5(CHST6):c.847_848delinsTG (p.Glu283Ter)Pathogenic
Macular corneal dystrophy
β˜…β˜…β˜†β˜†2023β†’ Residue 283
NM_021615.5(CHST6):c.231G>A (p.Trp77Ter)Pathogenic
Macular corneal dystrophy
β˜…β˜†β˜†β˜†2026β†’ Residue 77
NM_021615.5(CHST6):c.329A>G (p.Tyr110Cys)Pathogenic
Macular corneal dystrophy
β˜…β˜†β˜†β˜†2026β†’ Residue 110
NM_021615.5(CHST6):c.15_16insATGCTGTGCG (p.Val6fs)Pathogenic
Macular corneal dystrophy
β˜…β˜†β˜†β˜†2025β†’ Residue 6
NM_021615.5(CHST6):c.631C>G (p.Arg211Gly)Likely pathogenic
Macular corneal dystrophy
β˜…β˜†β˜†β˜†2025β†’ Residue 211
NM_021615.5(CHST6):c.161C>A (p.Ser54Tyr)Likely pathogenic
Macular corneal dystrophy
β˜…β˜†β˜†β˜†2025β†’ Residue 54
NM_021615.5(CHST6):c.614G>A (p.Arg205Gln)Pathogenic
Macular corneal dystrophy
β˜…β˜†β˜†β˜†2025β†’ Residue 205
NM_021615.5(CHST6):c.51del (p.Gln18fs)Pathogenic
Macular corneal dystrophy
β˜…β˜†β˜†β˜†2025β†’ Residue 18
NM_021615.5(CHST6):c.613C>T (p.Arg205Trp)Pathogenic
Macular corneal dystrophy
β˜…β˜†β˜†β˜†2025β†’ Residue 205
NM_021615.5(CHST6):c.573dup (p.Ala192fs)Pathogenic
Macular corneal dystrophy
β˜…β˜†β˜†β˜†2025β†’ Residue 192
NM_021615.5(CHST6):c.526G>A (p.Val176Met)Likely pathogenic
See cases
β˜…β˜†β˜†β˜†2025β†’ Residue 176
View on ClinVar β†—
Related Genes
CHST5Shared pathway100%LUMProtein interaction91%KERAProtein interaction81%CHST3Shared pathway80%CHST1Shared pathway80%SULT1C3Protein interaction73%
Tissue Expression6 tissues
Brain
100%
Heart
22%
Lung
5%
Ovary
2%
Liver
2%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CHST6CHST5LUMKERACHST3CHST1SULT1C3
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt Q9GZX3
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.71LoF Tolerant
pLIβ“˜
0.26Tolerant
Observed/Expected LoF0.47 [0.16–1.71]
RankingsWhere CHST6 stands among ~20K protein-coding genes
  • #7,748of 20,598
    Most Researched59
  • #1,280of 5,498
    Most Pathogenic Variants53 Β· top quartile
  • #16,147of 17,882
    Most Constrained (LOEUF)1.71
Genes detectedCHST6
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetic implications of CHST6 gene mutations and their corneal microstructural changes in macular corneal dystrophy patients.
PMID: 39959172
Mol Vis Β· 2024
1.00
2
Corneal dystrophies.
PMID: 19236704
Orphanet J Rare Dis Β· 2009
0.90
3
Localization and expression of CHST6 and keratan sulfate proteoglycans in the human cornea.
PMID: 20537995
Exp Eye Res Β· 2010
0.80
4
TGFBI, CHST6, and GSN gene analysis in Mexican patients with stromal corneal dystrophies.
PMID: 24801599
Graefes Arch Clin Exp Ophthalmol Β· 2014
0.70
5
Macular Corneal Dystrophy: An Updated Review.
PMID: 33171054
Curr Eye Res Β· 2021
0.60