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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CHST9
carbohydrate sulfotransferase 9
Chromosome 18 · 18q11.2
NCBI Gene: 83539Ensembl: ENSG00000154080.15HGNC: HGNC:19898UniProt: Q7L1S5
22PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
dermatan 4-sulfotransferase activitysulfur compound metabolic processproteoglycan biosynthetic processsulfotransferase activitybreast carcinomageneralized anxiety disordersmoking initiationresponse to radiation
✦AI Summary

CHST9 encodes a carbohydrate sulfotransferase that catalyzes the sulfation of chondroitin and dermatan sulfate, key components of proteoglycans and glycosaminoglycans involved in extracellular matrix structure and function. The enzyme adds sulfate groups to the C-4 position of β1,4-linked GalNAc residues 1, contributing to post-translational modifications of glycoproteins. Genetically, CHST9 variants associate with multiple disease and physiological states. GWAS meta-analysis identified CHST9 as one of five loci influencing circulating α-Klotho levels, a key regulator of phosphate homeostasis 2. The authors speculate that CHST9's post-translational modification function affects α-Klotho protein turnover and stability 2. CHST9 variants also associate with frailty risk in large-scale genome-wide studies, with colocalization analysis supporting a causal role 3, and with bronchopulmonary dysplasia susceptibility in premature infants, potentially through Wnt pathway interactions 4. In cancer contexts, CHST9 expression is downregulated in glioblastoma compared to non-GBM gliomas 5 and hepatocellular carcinoma 6, suggesting tumor-suppressive functions. Notably, CHST9 marks a distinct medium spiny neuron population in the nucleus accumbens with abundant opioid receptor expression across rodent, primate, and human species 78, implicating this population in opioid-related behaviors.

Sources cited
1
CHST9 belongs to a sulfotransferase family that adds sulfate to C-4 hydroxy group of β1,4-linked GalNAc in glycoproteins
PMID: 12653629
2
CHST9 is a post-translational modification gene associated with circulating α-Klotho levels and likely affects protein turnover and stability
PMID: 34542150
3
CHST9 colocalization analysis supports a causal role in frailty pathogenesis
PMID: 40764432
4
CHST9 SNP variants associate with bronchopulmonary dysplasia risk in premature infants through potential Wnt pathway interactions
PMID: 34853430
5
CHST9 is underexpressed in glioblastoma compared to non-GBM gliomas, suggesting tumor-suppressive function
PMID: 35456975
6
CHST9 is downregulated in hepatocellular carcinoma and identified as a crotonylation-associated prognostic feature
PMID: 39428564
7
CHST9 marks a distinct nucleus accumbens medium spiny neuron population with abundant opioid receptor expression, conserved across rodent, primate, and human species
PMID: 37904940
8
CHST9-expressing neurons in nucleus accumbens form discrete clusters with high opioid receptor expression, suggesting functional role in opioid response
PMID: 38957401
Disease Associationsⓘ20
breast carcinomaOpen Targets
0.36Weak
generalized anxiety disorderOpen Targets
0.33Weak
smoking initiationOpen Targets
0.30Weak
response to radiationOpen Targets
0.27Weak
placental retentionOpen Targets
0.27Weak
diabetes mellitusOpen Targets
0.26Weak
cervical carcinomaOpen Targets
0.26Weak
alcohol drinkingOpen Targets
0.24Weak
post term pregnancyOpen Targets
0.23Weak
ovarian neoplasmOpen Targets
0.21Weak
protozoa infectious diseaseOpen Targets
0.21Weak
luminal A breast carcinomaOpen Targets
0.20Weak
type 1 diabetes mellitusOpen Targets
0.19Weak
Abnormal nasolacrimal system morphologyOpen Targets
0.16Weak
major depressive disorderOpen Targets
0.13Weak
breast cancerOpen Targets
0.12Weak
breast neoplasmOpen Targets
0.11Weak
Abnormal central motor functionOpen Targets
0.09Suggestive
estrogen-receptor positive breast cancerOpen Targets
0.09Suggestive
triple-negative breast cancerOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
B4GALNT4Protein interaction92%B4GALNT3Protein interaction92%CA6Protein interaction91%CHST8Protein interaction78%CHST11Shared pathway67%CHST13Shared pathway67%
Tissue Expression6 tissues
Liver
100%
Heart
31%
Brain
30%
Lung
6%
Ovary
2%
Bone Marrow
1%
Gene Interaction Network
Click a node to explore
CHST9B4GALNT4B4GALNT3CA6CHST8CHST11CHST13
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q7L1S5
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.42LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.05 [0.78–1.42]
RankingsWhere CHST9 stands among ~20K protein-coding genes
  • #13,623of 20,598
    Most Researched22
  • #14,658of 17,882
    Most Constrained (LOEUF)1.42
Genes detectedCHST9
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
GWAS meta-analysis followed by Mendelian randomization revealed potential control mechanisms for circulating α-Klotho levels.
PMID: 34542150
Hum Mol Genet · 2022
1.00
2
Recognition of a Novel Gene Signature for Human Glioblastoma.
PMID: 35456975
Int J Mol Sci · 2022
0.90
3
Glycoprotein hormone GalNAc-4-sulphotransferase.
PMID: 12653629
Biochem Soc Trans · 2003
0.80
4
Integrative transcriptome analysis identifies a crotonylation gene signature for predicting prognosis and drug sensitivity in hepatocellular carcinoma.
PMID: 39428564
J Cell Mol Med · 2024
0.70
5
PMID: 37904940
bioRxiv · 2023
0.60