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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CIPC
CLOCK interacting pacemaker
Chromosome 14 · 14q24.3
NCBI Gene: 85457Ensembl: ENSG00000198894.9HGNC: HGNC:20365UniProt: Q9C0C6
22PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleoplasmcytosolnucleussmoking initiationknee fractureobesityuterine corpus cancer
✦AI Summary

CIPC (CLOCK Interacting Pacemaker) is a transcriptional repressor that functions as a negative-feedback regulator in circadian clock mechanisms, though its essential role in basic circadian function remains uncertain 1. The protein exhibits nuclear-cytoplasmic shuttling properties dependent on lysine residues 186-187 within its nuclear localization signal, and it interacts with key cellular proteins including the CAD enzyme involved in pyrimidine synthesis 1. Beyond circadian regulation, CIPC demonstrates versatile cellular functions by suppressing cell proliferation, causing cell cycle retardation, and inhibiting PMA-induced ERK activation in a nuclear localization-dependent manner 1. Disease relevance includes its potential role in cancer, as CIPC overexpression is associated with isochromosome 17q chr14 aberrations in medulloblastoma Groups 3 and 4 2. The gene shows differential expression patterns among medulloblastoma consensus subgroups, with associated biological pathways including ribosome function, phototransduction, and WNT signaling 2. CIPC expression can be modulated by gut microbiota modifications, as demonstrated in hypertensive models where ARB-treated microbes increased intestinal Cipc gene levels 3. Clinical significance lies in its potential as a therapeutic target, particularly in medulloblastoma where circadian clock genes including CIPC may influence patient survival outcomes 2.

Sources cited
1
CIPC is a negative-feedback regulator of circadian clock, has nuclear-cytoplasmic shuttling properties, interacts with CAD enzyme, and regulates cell proliferation and ERK activation
PMID: 26657846
2
CIPC is overexpressed in medulloblastoma with chromosome 17q aberrations and shows differential expression among MB subgroups
PMID: 40002179
3
CIPC expression in intestines can be modulated by ARB-treated gut microbiota in hypertensive models
PMID: 39135690
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
smoking initiationOpen Targets
0.27Weak
knee fractureOpen Targets
0.22Weak
obesityOpen Targets
0.19Weak
uterine corpus cancerOpen Targets
0.10Suggestive
acute myeloid leukemiaOpen Targets
0.03Suggestive
cancerOpen Targets
0.02Suggestive
acute kidney injuryOpen Targets
0.02Suggestive
SepsisOpen Targets
0.01Suggestive
squamous cell carcinomaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
myopathyOpen Targets
0.01Suggestive
ulcerative colitisOpen Targets
0.01Suggestive
Mobius syndromeOpen Targets
0.01Suggestive
leukemiaOpen Targets
0.01Suggestive
infectionOpen Targets
0.00Suggestive
melanomaOpen Targets
0.00Suggestive
nasopharyngeal neoplasmOpen Targets
0.00Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
multiminicore myopathyOpen Targets
0.00Suggestive
pancreatic ductal adenocarcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
BMAL1Protein interaction86%NPAS2Protein interaction86%CLOCKProtein interaction86%BMAL2Protein interaction86%PASD1Shared pathway33%PIWIL2Shared pathway13%
Tissue Expression6 tissues
Heart
100%
Brain
60%
Liver
25%
Lung
24%
Ovary
17%
Bone Marrow
10%
Gene Interaction Network
Click a node to explore
CIPCBMAL1NPAS2CLOCKBMAL2PASD1PIWIL2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9C0C6
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.64LoF Tolerant
pLIⓘ
0.44Tolerant
Observed/Expected LoF0.39 [0.25–0.64]
RankingsWhere CIPC stands among ~20K protein-coding genes
  • #13,624of 20,598
    Most Researched22
  • #4,584of 17,882
    Most Constrained (LOEUF)0.64
Genes detectedCIPC
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Versatile function of the circadian protein CIPC as a regulator of Erk activation.
PMID: 26657846
Biochem Biophys Res Commun · 2016
1.00
2
Intestinal microbiota by angiotensin receptor blocker therapy exerts protective effects against hypertensive damages.
PMID: 39135690
Imeta · 2024
0.90
3
Choice Reminder Modulates Choice-Induced Preference Change in Older Adults.
PMID: 36130192
J Gerontol B Psychol Sci Soc Sci · 2023
0.80
4
Suggestion of self-(in)coherence modulates cognitive dissonance.
PMID: 30161218
PLoS One · 2018
0.70
5
Transcription of Clock Genes in Medulloblastoma.
PMID: 40002179
Cancers (Basel) · 2025
0.60