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GeneE
3 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CLDN20
claudin 20
Chromosome 6 Β· 6q25.3
NCBI Gene: 49861Ensembl: ENSG00000171217.6HGNC: HGNC:2042UniProt: A0A140VKA2
22PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingtight junctionplasma membraneidentical protein bindingbenign neoplasmpituitary gland diseasehead and neck malignant neoplasiamathematical ability
✦AI Summary

CLDN20 (claudin 20) is a tight junction protein that plays a major role in obliterating the intercellular space through calcium-independent cell-cell adhesion activity. As a plasma membrane protein, CLDN20 mediates bicellular tight junction formation and maintains cell adhesion through protein binding interactions, functioning independently of calcium signaling. CLDN20 has emerged as a potential biomarker in multiple disease contexts. In a transcriptomic analysis comparing periodontitis and IgA nephropathy, CLDN20 was identified as one of seven critical crosstalk genes shared between these two conditions, suggesting a potential genetic link in their pathogenesis 1. Similarly, CLDN20 was identified among nine overlapping differentially expressed genes in ovarian cancer metastasis studies, although the specific functional role in cancer progression requires further investigation 2. In ischemic stroke research, CLDN20 was identified through multi-omics integration as a differentially expressed molecule in brain tissue at early stages of cerebral ischemia; however, when evaluated as a potential blood biomarker in acute stroke patients, CLDN20 showed less promise than other candidates like CTNND2 and GADD45G 3. These findings suggest CLDN20's expression is altered in multiple pathological conditions, though its specific mechanistic contributions beyond tight junction maintenance warrant further investigation.

Sources cited
1
CLDN20 identified as a critical crosstalk gene between periodontitis and IgA nephropathy
PMID: 36793719
2
CLDN20 identified as one of nine overlapping differentially expressed genes in ovarian cancer metastasis datasets
PMID: 35915456
3
CLDN20 identified as differentially expressed in mouse brain after cerebral ischemia but showed limited utility as a blood biomarker for acute stroke
PMID: 32868372
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
benign neoplasmOpen Targets
0.22Weak
pituitary gland diseaseOpen Targets
0.11Weak
head and neck malignant neoplasiaOpen Targets
0.09Suggestive
mathematical abilityOpen Targets
0.04Suggestive
Hallux valgusOpen Targets
0.04Suggestive
COVID-19Open Targets
0.03Suggestive
pathological myopiaOpen Targets
0.03Suggestive
premature birthOpen Targets
0.03Suggestive
adolescent idiopathic scoliosisOpen Targets
0.03Suggestive
diabetes mellitusOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
intelligenceOpen Targets
0.02Suggestive
placenta praeviaOpen Targets
0.02Suggestive
schizophreniaOpen Targets
0.02Suggestive
pulmonary vascular congestionOpen Targets
0.02Suggestive
periodontitisOpen Targets
0.01Suggestive
esophageal squamous cell carcinomaOpen Targets
0.01Suggestive
IGA glomerulonephritisOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.00Suggestive
strokeOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
TJP1Protein interaction96%CLDN23Protein interaction92%OCLNProtein interaction89%CLDN22Protein interaction83%CLDN25Protein interaction81%CLDN24Protein interaction73%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
33%
Ovary
31%
Lung
22%
Brain
12%
Heart
0%
Gene Interaction Network
Click a node to explore
CLDN20TJP1CLDN23OCLNCLDN22CLDN25CLDN24
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt P56880
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.70LoF Tolerant
pLIβ“˜
0.42Tolerant
Observed/Expected LoF0.00 [0.00–1.70]
RankingsWhere CLDN20 stands among ~20K protein-coding genes
  • #13,625of 20,598
    Most Researched22
  • #16,086of 17,882
    Most Constrained (LOEUF)1.70
Genes detectedCLDN20
Sources retrieved3 papers
Response timeβ€”
πŸ“„ Sources
3
1
Transcriptomic analysis reveals the potential crosstalk genes and immune relationship between IgA nephropathy and periodontitis.
PMID: 36793719
Front Immunol Β· 2023
1.00
2
A bioinformatics analysis: ZFHX4 is associated with metastasis and poor survival in ovarian cancer.
PMID: 35915456
J Ovarian Res Β· 2022
0.67
3
A Mouse Brain-based Multi-omics Integrative Approach Reveals Potential Blood Biomarkers for Ischemic Stroke.
PMID: 32868372
Mol Cell Proteomics Β· 2020
0.33