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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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CLDND1
claudin domain containing 1
Chromosome 3 · 3q11.2|3q12.1
NCBI Gene: 56650Ensembl: ENSG00000080822.17HGNC: HGNC:1322UniProt: A0A0R4J2F2
30PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cell surfaceprotein bindingbicellular tight junctionmembraneatrial fibrillationneurodegenerative diseasebreast canceroral squamous cell carcinoma
✦AI Summary

CLDND1 (claudin domain containing 1) is a claudin-family homolog that localizes to tight junctions and regulates vascular permeability by negatively controlling cell permeability to small molecules 1. CLDND1 expression is transcriptionally regulated by RORα 2 and MZF1 3, while post-transcriptionally regulated by miR-124 4 and miR-595 5. Mechanistically, CLDND1 knockdown increases endothelial permeability 1 and induces caspase-dependent apoptosis in breast cancer cells through mitochondrial pathways 6. In oral squamous cell carcinoma, elevated CLDND1 associates with an immune-cold, ferroptosis-resistant phenotype and independently predicts worse overall survival (HR≈1.51) and disease-specific survival (HR≈1.61) 7. CLDND1 suppression enhances ferroptosis susceptibility by reducing GPX4 and SLC7A11 expression 7. In cerebrovascular disease, transient CLDND1 decrease after hemorrhage promotes vascular hyperpermeability 1, and low miR-124 levels correlate with elevated CLDND1 in stroke-prone hypertensive rats 4. In lung cancer, CLDND1 serves as a downstream effector in the miR-199a-3p/FTO/MZF1 regulatory axis 8. These findings position CLDND1 as a multifunctional tight junction protein with roles in vascular integrity, cancer progression, and therapeutic resistance.

Sources cited
1
CLDND1 elevation in OSCC predicts worse survival, associates with ferroptosis resistance through NFE2L2/SLC7A11/GPX4 axis, and CLDND1 knockdown increases ferroptosis susceptibility
PMID: 41086680
2
CLDND1 knockdown induces caspase-dependent apoptosis in breast cancer cells through mitochondrial pathway involving cytochrome C release and PARP cleavage
PMID: 26083392
3
RORα directly regulates CLDND1 transcription by binding to a response element in the CLDND1 promoter
PMID: 28130419
4
MZF1 positively regulates CLDND1 transcription; MZF1 knockdown increases endothelial permeability
PMID: 33037622
5
miR-595 inversely correlates with CLDND1 and associates with bone density changes in osteoporotic fracture
PMID: 39739707
6
miR-124 post-transcriptionally regulates CLDND1 mRNA; decreased miR-124 correlates with elevated CLDND1 in stroke-prone hypertensive rats
PMID: 29530526
7
CLDND1 localizes to endothelial tight junctions; CLDND1 knockdown increases small molecule permeability; CLDND1 transiently decreases after cerebellar hemorrhage
PMID: 28244141
8
CLDND1 is a downstream transcriptional target of MZF1 in the miR-199a-3p/FTO/MZF1/CLDND1 regulatory axis in lung cancer
PMID: 41201047
Disease Associationsⓘ20
atrial fibrillationOpen Targets
0.42Moderate
neurodegenerative diseaseOpen Targets
0.29Weak
breast cancerOpen Targets
0.04Suggestive
oral squamous cell carcinomaOpen Targets
0.03Suggestive
strokeOpen Targets
0.02Suggestive
non-small cell lung carcinomaOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
gastric cancerOpen Targets
0.01Suggestive
cerebrovascular disorderOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
Down syndromeOpen Targets
0.00Suggestive
astrocytomaOpen Targets
0.00Suggestive
schizophreniaOpen Targets
0.00Suggestive
rheumatoid arthritisOpen Targets
0.00Suggestive
leukodystrophyOpen Targets
0.00Suggestive
lung adenocarcinomaOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.00Suggestive
HIV infectionOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZDHHC5Protein interaction83%GOLGA7Protein interaction83%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
20%
Ovary
11%
Heart
11%
Lung
8%
Liver
6%
Gene Interaction Network
Click a node to explore
CLDND1ZDHHC5GOLGA7
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9NY35
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.81LoF Tolerant
pLIⓘ
0.03Tolerant
Observed/Expected LoF0.50 [0.32–0.81]
RankingsWhere CLDND1 stands among ~20K protein-coding genes
  • #11,886of 20,598
    Most Researched30
  • #6,776of 17,882
    Most Constrained (LOEUF)0.81
Genes detectedCLDND1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
CLDND1 as a prognostic ferroptosis-associated biomarker in oral squamous cell carcinoma.
PMID: 41086680
Biochem Biophys Res Commun · 2025
1.00
2
Down Regulation of CLDND1 Induces Apoptosis in Breast Cancer Cells.
PMID: 26083392
PLoS One · 2015
0.90
3
The retinoic acid receptor-related orphan receptor α positively regulates tight junction protein claudin domain-containing 1 mRNA expression in human brain endothelial cells.
PMID: 28130419
J Biochem · 2017
0.80
4
Transcription of CLDND1 in human brain endothelial cells is regulated by the myeloid zinc finger 1.
PMID: 33037622
Clin Exp Pharmacol Physiol · 2021
0.70
5
MiR-595 and Cldnd1: Potential related factors for bone loss in postmenopausal women with hip osteoporotic fracture.
PMID: 39739707
PLoS One · 2024
0.60