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25 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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CLTA
clathrin light chain A
Chromosome 9 · 9p13.3
NCBI Gene: 1211Ensembl: ENSG00000122705.18HGNC: HGNC:2090UniProt: C9J8P9
155PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
membranelysosomeendosomeclathrin heavy chain bindinginfluenzahepatocellular carcinomabile duct disordercongenital secretory chloride diarrhea 1
✦AI Summary

CLTA (clathrin light chain A) is a critical component of clathrin-coated vesicles that functions primarily in endocytosis and cellular transport. CLTA facilitates the uptake of small extracellular vesicles (sEVs) through clathrin-mediated endocytosis, playing a crucial role in intercellular communication 1. The gene is located on chromosome 9-q24 and undergoes alternative mRNA splicing to generate tissue-specific protein isoforms, with neuron-specific insertions encoded by discrete exons 2. In hepatocellular carcinoma (HCC), CLTA is significantly overexpressed in tumor tissues and its expression progressively increases with tumor stage 1. CLTA enhances cancer cell proliferation, motility, and invasiveness by increasing CAPG expression to facilitate sEV uptake 1. Additionally, HCC-derived sEV-CLTA remodels the microvascular niche by stabilizing basigin (BSG), promoting angiogenesis and endothelial dysfunction 3. CLTA has emerged as a potential diagnostic biomarker and therapeutic target, with CLTA inhibitor Pitstop 2 showing efficacy in patient-derived xenograft models 13. The protein has also been identified as a diagnostic marker for postmenopausal osteoporosis and thyroid cancer, indicating its broader clinical significance across multiple diseases 45.

Sources cited
1
CLTA facilitates sEV uptake through clathrin-mediated endocytosis and is overexpressed in HCC with progressive increase by tumor stage
PMID: 37354358
2
CLTA gene maps to chromosome 12q23-q24 and undergoes alternative splicing to generate tissue-specific isoforms
PMID: 7713494
3
HCC-derived sEV-CLTA remodels microvascular niche by stabilizing basigin and promoting angiogenesis
PMID: 37606345
4
CLTA identified as potential diagnostic marker for postmenopausal osteoporosis
PMID: 40791155
5
CLTA identified as hub gene and diagnostic biomarker in thyroid cancer
PMID: 40372556
Disease Associationsⓘ20
influenzaOpen Targets
0.37Weak
hepatocellular carcinomaOpen Targets
0.07Suggestive
bile duct disorderOpen Targets
0.05Suggestive
congenital secretory chloride diarrhea 1Open Targets
0.04Suggestive
oral squamous cell carcinomaOpen Targets
0.04Suggestive
Alzheimer diseaseOpen Targets
0.03Suggestive
neoplasmOpen Targets
0.03Suggestive
acute lung injuryOpen Targets
0.03Suggestive
gastric cancerOpen Targets
0.03Suggestive
primary biliary cirrhosisOpen Targets
0.03Suggestive
gestational diabetesOpen Targets
0.02Suggestive
pancreatic adenocarcinomaOpen Targets
0.02Suggestive
thyroid carcinomaOpen Targets
0.02Suggestive
lung adenocarcinomaOpen Targets
0.02Suggestive
metabolic diseaseOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
schizophreniaOpen Targets
0.02Suggestive
cystic fibrosisOpen Targets
0.02Suggestive
melanomaOpen Targets
0.02Suggestive
Leber congenital amaurosisOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CLTCL1Protein interaction100%MYO6Protein interaction97%SYNRGProtein interaction97%EHD2Protein interaction93%AP1B1Protein interaction92%AP1G1Protein interaction92%
Tissue Expression6 tissues
Brain
100%
Ovary
83%
Lung
61%
Liver
60%
Bone Marrow
40%
Heart
25%
Gene Interaction Network
Click a node to explore
CLTACLTCL1MYO6SYNRGEHD2AP1B1AP1G1
PROTEIN STRUCTURE
Preparing viewer…
PDB6E5N · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.55Moderately Constrained
pLIⓘ
0.94Intolerant
Observed/Expected LoF0.26 [0.14–0.55]
RankingsWhere CLTA stands among ~20K protein-coding genes
  • #2,907of 20,598
    Most Researched155 · top quartile
  • #3,484of 17,882
    Most Constrained (LOEUF)0.55 · top quartile
Genes detectedCLTA
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Gut microbiota modulation of chemotherapy efficacy and toxicity.
PMID: 28270698
Nat Rev Gastroenterol Hepatol · 2017
1.00
2
Identification and validation of
PMID: 40791155
Biomol Biomed · 2025
0.90
3
Identification and functional characterization of hub genes CLTA, EDIL3, HAPLN1, and HIP1 as diagnostic biomarkers and therapeutic targets in thyroid cancer and Hashimoto's thyroiditis.
PMID: 40372556
Clin Exp Med · 2025
0.80
4
Aberrant follicular regulatory T cells associate with immunoglobulin hyperproduction in nasal polyps with ectopic lymphoid tissues.
PMID: 38072196
J Allergy Clin Immunol · 2024
0.72
5
Chromosomal location and some structural features of human clathrin light-chain genes (CLTA and CLTB).
PMID: 7713494
Genomics · 1994
0.70