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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CMTM3
CKLF like MARVEL transmembrane domain containing 3
Chromosome 16 · 16q22.1
NCBI Gene: 123920Ensembl: ENSG00000140931.20HGNC: HGNC:19174UniProt: H3BUD5
35PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingcytosolcytoplasmic vesiclemembranecervical carcinomaneoplasmgastric cancerhepatocellular carcinoma
✦AI Summary

CMTM3 (CKLF-like MARVEL transmembrane domain containing 3) is a membrane protein with pleiotropic regulatory roles across immune, inflammatory, and oncogenic pathways. Primary function: CMTM3 acts as a tumor suppressor gene that is frequently downregulated in multiple cancer types including testicular, prostate, and gastric cancers 123. Mechanism: CMTM3 inhibits cancer cell proliferation, migration, and invasion through multiple signaling pathways. In cancer contexts, CMTM3 re-expression induces G2 cell-cycle arrest and apoptosis via p53 activation and caspase cleavage 1, and suppresses ERK1/2 phosphorylation 23. CMTM3 also stabilizes p53 protein by inhibiting proteasome-mediated degradation 4. In immune contexts, CMTM3 expression is elevated in sepsis and aggravates inflammation by promoting TLR4-dependent neutrophil activation and CXCR2-mediated recruitment 5. CMTM3 promotes colitis-associated carcinogenesis by stabilizing clathrin heavy chain, increasing vascular permeability through VE-cadherin downregulation 6. In cardiac tissue, CMTM3 deficiency induces hypertrophy via MAPK/ERK pathway activation 7. Disease relevance: CMTM3 dysregulation contributes to cancer progression, sepsis-induced organ damage, inflammatory bowel disease, and cardiac hypertrophy. Clinical significance: CMTM3 expression correlates with prognosis in gastric cancer and represents a potential therapeutic target for multiple diseases.

Sources cited
1
CMTM3 elevates TLR4 and CXCR2 expression on neutrophils, promoting migration and sepsis pathology
PMID: 39455728
2
CMTM3 acts as tumor suppressor in testicular cancer via p53 activation and G2 arrest; downregulated by CpG methylation
PMID: 24586462
3
CMTM3 stabilizes clathrin heavy chain, reducing VE-cadherin and increasing vascular permeability in colitis-associated carcinogenesis
PMID: 40306490
4
CMTM3 deficiency induces cardiac hypertrophy through MAPK/ERK pathway activation; CMTM3 overexpression inhibits ERK phosphorylation
PMID: 37229825
5
CMTM3 is reduced in prostate cancer and suppresses migration and invasion through ERK1/2 inhibition
PMID: 25990505
6
CMTM3 is broadly expressed in normal tissues but downregulated in carcinomas; connected with immune system in tumorigenesis
PMID: 27469927
7
CMTM3 is downregulated in gastric cancer and independently predicts favorable prognosis; inhibits MMP2 and ERK phosphorylation
PMID: 24131472
8
CMTM3 stabilizes p53 by inhibiting proteasome-mediated degradation, suppressing osteogenic transdifferentiation
PMID: 39195242
Disease Associationsⓘ20
cervical carcinomaOpen Targets
0.15Weak
neoplasmOpen Targets
0.10Weak
gastric cancerOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
esophageal squamous cell carcinomaOpen Targets
0.08Suggestive
chordomaOpen Targets
0.07Suggestive
colitisOpen Targets
0.07Suggestive
SepsisOpen Targets
0.07Suggestive
gliomaOpen Targets
0.07Suggestive
left ventricular noncompactionOpen Targets
0.06Suggestive
testicular carcinomaOpen Targets
0.06Suggestive
hypertrophic cardiomyopathyOpen Targets
0.06Suggestive
dilated cardiomyopathy 1GGOpen Targets
0.04Suggestive
dilated cardiomyopathy 1AAOpen Targets
0.04Suggestive
facial morphologyOpen Targets
0.04Suggestive
dilated cardiomyopathy 1IOpen Targets
0.04Suggestive
cancerOpen Targets
0.04Suggestive
Barth syndromeOpen Targets
0.04Suggestive
pachyonychia congenitaOpen Targets
0.04Suggestive
left ventricular noncompaction 10Open Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CMTM8Protein interaction97%CMTM4Protein interaction96%CMTM2Protein interaction76%CKLFProtein interaction76%CMTM6Protein interaction76%CMTM7Protein interaction76%
Tissue Expression6 tissues
Lung
100%
Ovary
97%
Bone Marrow
73%
Heart
46%
Brain
26%
Liver
17%
Gene Interaction Network
Click a node to explore
CMTM3CMTM8CMTM4CMTM2CKLFCMTM6CMTM7
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q96MX0
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.80LoF Tolerant
pLIⓘ
0.25Tolerant
Observed/Expected LoF0.43 [0.24–0.80]
RankingsWhere CMTM3 stands among ~20K protein-coding genes
  • #10,943of 20,598
    Most Researched35
  • #6,674of 17,882
    Most Constrained (LOEUF)0.80
Genes detectedCMTM3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
CMTM3 regulates neutrophil activation and aggravates sepsis through TLR4 signaling.
PMID: 39455728
EMBO Rep · 2024
1.00
2
CMTM3 inhibits human testicular cancer cell growth through inducing cell-cycle arrest and apoptosis.
PMID: 24586462
PLoS One · 2014
0.90
3
CMTM3 Promotes Colitis-associated Carcinogenesis via CLTC Stabilization and Modulation of VE-cadherin.
PMID: 40306490
Cell Mol Gastroenterol Hepatol · 2025
0.80
4
CMTM3 deficiency induces cardiac hypertrophy by regulating MAPK/ERK signaling.
PMID: 37229825
Biochem Biophys Res Commun · 2023
0.70
5
CMTM3 is reduced in prostate cancer and inhibits migration, invasion and growth of LNCaP cells.
PMID: 25990505
Clin Transl Oncol · 2015
0.60