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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CMTM6
CKLF like MARVEL transmembrane domain containing 6
Chromosome 3 · 3p22.3
NCBI Gene: 54918Ensembl: ENSG00000091317.9HGNC: HGNC:19177UniProt: Q9NX76
58PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingprotein transportregulation of protein stabilityendocytic recyclingresponse to statinneoplasmhepatocellular carcinomacolorectal carcinoma
✦AI Summary

CMTM6 is a transmembrane protein that functions as a master regulator of PD-L1 protein stability and surface expression 1. The protein localizes to plasma membrane and recycling endosomes, where it directly binds to PD-L1 and prevents its lysosomal degradation by blocking ubiquitination 12. CMTM6 maintains PD-L1 protein levels without affecting transcription, thereby extending PD-L1 half-life and enabling tumor immune evasion 2. Beyond PD-L1, CMTM6 also regulates CD58 expression, a costimulatory ligand important for T-cell activation, demonstrating its broader role in immune checkpoint regulation 3. The protein exhibits specificity for these immune regulators without affecting MHC class I expression 1. In cancer contexts, CMTM6 contributes to therapeutic resistance mechanisms - its overexpression correlates with trastuzumab resistance in HER2+ breast cancer through HER2 protein stabilization 4, and drives gemcitabine resistance in pancreatic cancer via an EP300-IGF2BP1 feedback loop 5. CMTM6 depletion enhances tumor-specific T-cell activity and alleviates immunosuppression 1, making it an attractive immunotherapy target. Its function can be antagonized by Hsc70, which competes for PD-L1 binding and promotes lysosomal degradation 6.

Sources cited
1
CMTM6 is a master regulator of PD-L1 that prevents lysosomal degradation and enhances immune evasion
PMID: 28813417
2
CMTM6 binds PD-L1, reduces ubiquitination, increases protein half-life without affecting transcription
PMID: 28813410
3
CMTM6 regulates both PD-L1 and CD58 expression, affecting T-cell responses
PMID: 37683639
4
CMTM6 overexpression contributes to trastuzumab resistance by stabilizing HER2 protein
PMID: 36627608
5
CMTM6 drives gemcitabine resistance through EP300-IGF2BP1 feedback loop
PMID: 39488785
6
Hsc70 antagonizes CMTM6 function by competing for PD-L1 binding and promoting degradation
PMID: 38762492
Disease Associationsⓘ20
response to statinOpen Targets
0.29Weak
neoplasmOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.11Weak
colorectal carcinomaOpen Targets
0.11Weak
Subdural hemorrhageOpen Targets
0.10Weak
gliomaOpen Targets
0.10Suggestive
glioblastoma multiformeOpen Targets
0.09Suggestive
triple-negative breast cancerOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.09Suggestive
cancerOpen Targets
0.09Suggestive
pancreatic adenocarcinomaOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
lung adenocarcinomaOpen Targets
0.08Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.08Suggestive
melanomaOpen Targets
0.06Suggestive
cervical cancerOpen Targets
0.06Suggestive
cervical carcinomaOpen Targets
0.05Suggestive
oral squamous cell carcinomaOpen Targets
0.04Suggestive
lung cancerOpen Targets
0.04Suggestive
gastric cancerOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CMTM8Protein interaction97%CMTM7Protein interaction96%CD274Protein interaction87%CMTM1Protein interaction82%CMTM2Protein interaction76%CMTM3Protein interaction76%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
79%
Lung
40%
Heart
26%
Brain
18%
Ovary
15%
Gene Interaction Network
Click a node to explore
CMTM6CMTM8CMTM7CD274CMTM1CMTM2CMTM3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9NX76
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.32LoF Tolerant
pLIⓘ
0.02Tolerant
Observed/Expected LoF0.67 [0.37–1.32]
RankingsWhere CMTM6 stands among ~20K protein-coding genes
  • #7,848of 20,598
    Most Researched58
  • #13,874of 17,882
    Most Constrained (LOEUF)1.32
Genes detectedCMTM6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
CMTM6 maintains the expression of PD-L1 and regulates anti-tumour immunity.
PMID: 28813417
Nature · 2017
1.00
2
CMTM6 overexpression confers trastuzumab resistance in HER2-positive breast cancer.
PMID: 36627608
Mol Cancer · 2023
0.90
3
Identification of CMTM6 and CMTM4 as PD-L1 protein regulators.
PMID: 28813410
Nature · 2017
0.80
4
CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1.
PMID: 37683639
Cancer Cell · 2023
0.70
5
Hsc70 promotes anti-tumor immunity by targeting PD-L1 for lysosomal degradation.
PMID: 38762492
Nat Commun · 2024
0.60