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5 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SNX21
sorting nexin family member 21
Chromosome 20 · 20q13.12
NCBI Gene: 90203Ensembl: ENSG00000124104.19HGNC: HGNC:16154UniProt: A0A0S2Z632
19PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
phosphatidylinositol-4,5-bisphosphate bindingearly endosome membranephosphatidylinositol-3-phosphate bindingphosphatidylinositol phosphate bindingtrigeminal nerve diseasebreast carcinomaprostate carcinomaasthma
✦AI Summary

SNX21 (sorting nexin family member 21) is a membrane-associated scaffolding protein that functions in endosomal trafficking and protein organization. Primary Function: SNX21 contains a phosphatidylinositol 3-phosphate (PtdIns(3)P) binding PX domain and binds to phosphatidylinositol 4,5-bisphosphate-enriched membranes 1, localizing to early endosome membranes where it regulates receptor degradative sorting 2. Mechanism: SNX21 functions as an endosomal scaffold through distinct protein interaction domains: its N-terminal extension recruits huntingtin (Htt), while its PXB domain associates with septins, a family of cytoskeletal and membrane-associated proteins 3. This dual-binding capacity enables SNX21 to coordinate endosomal organization and facilitate movement of internalized vesicles into early endosomes 2. Disease Relevance: SNX21 appears to regulate the IL-22-STAT3-CCL20 pathway, as it was identified as a potential target of miR-26, a tumor suppressor dysregulated in cutaneous T-cell lymphoma 4. Additionally, SNX21 expression is regulated by MMP gene variants associated with hypertension development 5. Clinical Significance: Given SNX21's role in receptor trafficking and its association with disease-related regulatory pathways, modulating SNX21 function may have therapeutic implications for lymphomas and metabolic disorders, though further mechanistic studies are needed.

Sources cited
1
SNX21 functions as an endosomal scaffold protein with N-terminal huntingtin interaction and PXB domain-mediated septin binding
PMID: 30072438
2
SNX21 regulates EGF receptor degradative sorting through PtdIns(3)P-dependent early endosome association
PMID: 23986476
3
SNX21 is a candidate target of tumor-suppressive miR-26 dysregulated in cutaneous T-cell lymphoma
PMID: 35133054
4
SNX21 expression is affected by MMP gene polymorphisms associated with essential hypertension in women
PMID: 33351325
5
SNX21 contains a PX domain for phospholipid binding and is expressed during human liver development
PMID: 12459172
Disease Associationsⓘ20
trigeminal nerve diseaseOpen Targets
0.07Suggestive
breast carcinomaOpen Targets
0.05Suggestive
prostate carcinomaOpen Targets
0.05Suggestive
asthmaOpen Targets
0.04Suggestive
enteritisOpen Targets
0.04Suggestive
Crohn's diseaseOpen Targets
0.02Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
laryngeal squamous cell carcinomaOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
gastric cancerOpen Targets
0.00Suggestive
glioblastoma multiformeOpen Targets
0.00Suggestive
adrenal cortex carcinomaOpen Targets
0.00Suggestive
Huntington diseaseOpen Targets
0.00Suggestive
ulcerative colitisOpen Targets
0.00Suggestive
essential hypertensionOpen Targets
0.00Suggestive
obesityOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
cerebral amyloid angiopathyOpen Targets
0.00Suggestive
glycogen storage disease VIOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZG16Shared pathway100%SNX20Shared pathway100%KTN1Shared pathway50%LRP1BShared pathway50%SCAMP4Shared pathway50%GNPTABShared pathway33%
Tissue Expression6 tissues
Ovary
100%
Lung
35%
Heart
34%
Liver
20%
Brain
20%
Bone Marrow
8%
Gene Interaction Network
Click a node to explore
SNX21ZG16SNX20KTN1LRP1BSCAMP4GNPTAB
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q05DJ0
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.70LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.29 [0.99–1.70]
RankingsWhere SNX21 stands among ~20K protein-coding genes
  • #14,549of 20,598
    Most Researched19
  • #16,104of 17,882
    Most Constrained (LOEUF)1.70
Genes detectedSNX21
Sources retrieved5 papers
Response time—
📄 Sources
5
1
Sorting nexin-21 is a scaffold for the endosomal recruitment of huntingtin.
PMID: 30072438
J Cell Sci · 2018
1.00
2
SNX15 links clathrin endocytosis to the PtdIns3P early endosome independently of the APPL1 endosome.
PMID: 23986476
J Cell Sci · 2013
0.80
3
Downregulation of miR-26 promotes invasion and metastasis via targeting interleukin-22 in cutaneous T-cell lymphoma.
PMID: 35133054
Cancer Sci · 2022
0.60
4
[Gene-environment interactions between polymorphic loci of MMPs and obesity in essential hypertension in women.].
PMID: 33351325
Probl Endokrinol (Mosk) · 2020
0.40
5
Expression of a novel member of sorting nexin gene family, SNX-L, in human liver development.
PMID: 12459172
Biochem Biophys Res Commun · 2002
0.20