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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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GNPTAB
N-acetylglucosamine-1-phosphate transferase subunits alpha and beta
Chromosome 12 · 12q23.2
NCBI Gene: 79158Ensembl: ENSG00000111670.17HGNC: HGNC:29670UniProt: Q3T906
82PubMed Papers
22Diseases
0Drugs
438Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
carbohydrate phosphorylationGolgi apparatusGolgi membraneprotein bindingmucolipidosis type III, alpha/betamucolipidosis type IImucolipidosisGNPTAB-mucolipidosis
✦AI Summary

GNPTAB encodes the α and β subunits of N-acetylglucosamine-1-phosphate transferase, a Golgi apparatus enzyme catalyzing the phosphorylation of high-mannose oligosaccharides with mannose-6-phosphate (M6P) markers 1. M6P residues serve as critical recognition signals enabling mannose-6-phosphate receptor (MPR)-mediated vesicular transport of soluble lysosomal enzymes from the Golgi to endosomal/prelysosomal compartments 2. Loss of GNPTAB function results in impaired lysosomal enzyme trafficking and depletion of lysosomal hydrolases, compromising cellular degradative capacity 2. Mutations in GNPTAB cause mucolipidosis (ML) II and ML III alpha/beta, rare autosomal recessive lysosomal storage disorders characterized by skeletal deformities, developmental delay, and shortened lifespan 3. ML II patients exhibit median survival of 5.0 years with frequent pulmonary and cardiac complications, while ML III typically shows prolonged survival (median 62.0 years) 3. Beyond lysosomal storage disease, GNPTAB dysfunction impairs regenerative responses in differentiated cells by disrupting mTORC1-mediated proliferation and metaplasia-associated gene expression 4, and astrocyte-specific GNPTAB deficiency causes speech-related vocalization deficits in animal models of human stuttering 5. Additionally, GNPTAB mutations enhance alpha-synuclein neurotoxicity, implicating this gene in Parkinson's disease pathogenesis 6.

Sources cited
1
GNPTAB catalyzes M6P addition to lysosomal enzymes and is mutated in mucolipidosis II/III
PMID: 29872134
2
GlcNAc-1-phosphotransferase stability depends on LYSET; enzyme deficiency depletes lysosomal hydrolases
PMID: 36074822
3
GNPTAB mutations cause mucolipidosis II/III with specific survival and mortality data
PMID: 34172897
4
Gnptab-deficient mice show impaired metaplasia-associated gene expression and mTORC1-mediated proliferation
PMID: 29467218
5
Human stuttering mutations in GNPTAB cause vocalization deficits via astrocyte dysfunction
PMID: 31405983
6
GNPTAB knockdown enhances alpha-synuclein-induced neurodegeneration in Drosophila
PMID: 37200393
Disease Associationsⓘ22
mucolipidosis type III, alpha/betaOpen Targets
0.85Strong
mucolipidosis type IIOpen Targets
0.84Strong
mucolipidosisOpen Targets
0.56Moderate
GNPTAB-mucolipidosisOpen Targets
0.54Moderate
Joubert syndrome and related disordersOpen Targets
0.52Moderate
genetic disorderOpen Targets
0.51Moderate
neurodegenerative diseaseOpen Targets
0.50Moderate
mucopolysaccharidosis type 3AOpen Targets
0.50Moderate
Abnormality of metabolism/homeostasisOpen Targets
0.41Moderate
lysosomal storage diseaseOpen Targets
0.37Weak
cervical carcinomaOpen Targets
0.36Weak
Familial Scheuermann diseaseOpen Targets
0.27Weak
Legg-Calve-Perthes diseaseOpen Targets
0.27Weak
Legg-Calvé-Perthes diseaseOpen Targets
0.27Weak
Scheuermann diseaseOpen Targets
0.27Weak
poisoningOpen Targets
0.25Weak
JaundiceOpen Targets
0.19Weak
glycogen storage disease due to lactate dehydrogenase H-subunit deficiencyOpen Targets
0.09Suggestive
alcohol sensitivity, acuteOpen Targets
0.07Suggestive
acatalasiaOpen Targets
0.06Suggestive
Mucolipidosis type IIUniProt
Mucolipidosis type III complementation group AUniProt
Pathogenic Variants438
NM_024312.5(GNPTAB):c.2249dup (p.Asn750fs)Pathogenic
Mucolipidosis type II|not provided
★★☆☆2026→ Residue 750
NM_024312.5(GNPTAB):c.3571C>T (p.Arg1191Cys)Likely pathogenic
Mucolipidosis type II;Pseudo-Hurler polydystrophy|Mucolipidosis type II|Mucolipidosis
★★☆☆2026→ Residue 1191
NM_024312.5(GNPTAB):c.1959_1962del (p.Ser654fs)Pathogenic
Mucolipidosis type II|Mucolipidosis type II;Pseudo-Hurler polydystrophy|Abnormality of metabolism/homeostasis|GNPTAB-Related Disorders|Mucolipidosis
★★☆☆2026→ Residue 654
NM_024312.5(GNPTAB):c.2715+2T>GPathogenic
Pseudo-Hurler polydystrophy|Mucolipidosis type II;Pseudo-Hurler polydystrophy|not provided|Mucolipidosis|Mucolipidosis type II
★★☆☆2026
NM_024312.5(GNPTAB):c.2715+1G>APathogenic
Pseudo-Hurler polydystrophy|Mucolipidosis type II;Pseudo-Hurler polydystrophy|Mucolipidosis type II|not provided|GNPTAB-Related Disorders|Mucolipidosis
★★☆☆2026
NM_024312.5(GNPTAB):c.2498_2502del (p.Glu833fs)Pathogenic
Pseudo-Hurler polydystrophy;Mucolipidosis type II|Mucolipidosis type II
★★☆☆2026→ Residue 833
NM_024312.5(GNPTAB):c.3503_3504del (p.Leu1168fs)Pathogenic
Mucolipidosis type II|Pseudo-Hurler polydystrophy|not provided|Mucolipidosis type II;Pseudo-Hurler polydystrophy|Inborn genetic diseases|GNPTAB-Related Disorders
★★☆☆2026→ Residue 1168
NM_024312.5(GNPTAB):c.616_619del (p.Thr206fs)Pathogenic
Mucolipidosis type II|Mucolipidosis type II;Pseudo-Hurler polydystrophy|Mucolipidosis|not provided|GNPTAB-Related Disorders
★★☆☆2026→ Residue 206
NM_024312.5(GNPTAB):c.3565C>T (p.Arg1189Ter)Pathogenic
Mucolipidosis type II|Pseudo-Hurler polydystrophy|Mucolipidosis type II;Pseudo-Hurler polydystrophy|not provided|Mucolipidosis|GNPTAB-Related Disorders
★★☆☆2026→ Residue 1189
NM_024312.5(GNPTAB):c.1196C>T (p.Ser399Phe)Pathogenic
Pseudo-Hurler polydystrophy|Mucolipidosis type II;Pseudo-Hurler polydystrophy|Mucolipidosis type II|not provided
★★☆☆2026→ Residue 399
NM_024312.5(GNPTAB):c.1959_1960del (p.Pro655fs)Pathogenic
Inborn genetic diseases|Pseudo-Hurler polydystrophy|Mucolipidosis type II|Mucolipidosis type II;Pseudo-Hurler polydystrophy|not provided|Mucolipidosis
★★☆☆2026→ Residue 655
NM_024312.5(GNPTAB):c.344_345del (p.Thr115fs)Pathogenic
Mucolipidosis type II|Mucolipidosis type II;Pseudo-Hurler polydystrophy|not provided|Mucolipidosis
★★☆☆2026→ Residue 115
NM_024312.5(GNPTAB):c.3335+1G>APathogenic
Mucolipidosis type II|Mucolipidosis|not provided|Pseudo-Hurler polydystrophy|Mucolipidosis type II;Pseudo-Hurler polydystrophy
★★☆☆2026
NM_024312.5(GNPTAB):c.3094del (p.Thr1032fs)Pathogenic
Mucolipidosis type II|Mucolipidosis type II;Pseudo-Hurler polydystrophy|Mucolipidosis
★★☆☆2025→ Residue 1032
NM_024312.5(GNPTAB):c.1123C>T (p.Arg375Ter)Pathogenic
Mucolipidosis type II|Pseudo-Hurler polydystrophy|not provided|Mucolipidosis type II;Pseudo-Hurler polydystrophy|GNPTAB-Related Disorders
★★☆☆2025→ Residue 375
NM_024312.5(GNPTAB):c.10A>C (p.Lys4Gln)Pathogenic
Pseudo-Hurler polydystrophy|Mucopolysaccharidosis, MPS-III-A|Mucolipidosis type II;Pseudo-Hurler polydystrophy|Mucolipidosis type II
★★☆☆2025→ Residue 4
NM_024312.5(GNPTAB):c.1399del (p.Asp467fs)Pathogenic
Mucolipidosis type II|Mucolipidosis type II;Pseudo-Hurler polydystrophy|Mucolipidosis|not provided
★★☆☆2025→ Residue 467
NM_024312.5(GNPTAB):c.1947C>G (p.Tyr649Ter)Pathogenic
Mucolipidosis type II;Pseudo-Hurler polydystrophy|Mucolipidosis type II
★★☆☆2025→ Residue 649
NM_024312.5(GNPTAB):c.613C>T (p.Gln205Ter)Pathogenic
Mucolipidosis type II;Pseudo-Hurler polydystrophy|Inborn genetic diseases|Mucolipidosis type II
★★☆☆2025→ Residue 205
NM_024312.5(GNPTAB):c.136C>T (p.Arg46Ter)Pathogenic
Mucolipidosis type II|Mucolipidosis type II;Pseudo-Hurler polydystrophy|not provided
★★☆☆2025→ Residue 46
View on ClinVar ↗
Related Genes
NAGPAProtein interaction100%PURAProtein interaction87%ADKProtein interaction83%MDH2Protein interaction80%SYCP3Protein interaction78%RAD51Protein interaction71%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
99%
Brain
67%
Lung
57%
Ovary
25%
Liver
23%
Gene Interaction Network
Click a node to explore
GNPTABNAGPAPURAADKMDH2SYCP3RAD51
PROTEIN STRUCTURE
Preparing viewer…
PDB9BGF · 2.90 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.80LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.65 [0.53–0.80]
RankingsWhere GNPTAB stands among ~20K protein-coding genes
  • #5,793of 20,598
    Most Researched82
  • #123of 5,498
    Most Pathogenic Variants438 · top 5%
  • #6,652of 17,882
    Most Constrained (LOEUF)0.80
Genes detectedGNPTAB
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Regenerative proliferation of differentiated cells by mTORC1-dependent paligenosis.
PMID: 29467218
EMBO J · 2018
1.00
2
Lysosomal enzyme trafficking factor LYSET enables nutritional usage of extracellular proteins.
PMID: 36074822
Science · 2022
0.90
3
Human
PMID: 31405983
Proc Natl Acad Sci U S A · 2019
0.80
4
Functional screening of lysosomal storage disorder genes identifies modifiers of alpha-synuclein neurotoxicity.
PMID: 37200393
PLoS Genet · 2023
0.70
5
Mucolipidosis type II and type III: a systematic review of 843 published cases.
PMID: 34172897
Genet Med · 2021
0.60