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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
MDH2
malate dehydrogenase 2
Chromosome 7 Β· 7q11.23
NCBI Gene: 4191Ensembl: ENSG00000146701.12HGNC: HGNC:6971UniProt: A0A024R4K3
200PubMed Papers
21Diseases
0Drugs
20Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Trending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
extracellular exosomeL-malate dehydrogenase (NAD+) activitytricarboxylic acid cyclemalate metabolic processdevelopmental and epileptic encephalopathy, 51genetic developmental and epileptic encephalopathygenetic disorderInfantile encephalopathy
✦AI Summary

MDH2 (malate dehydrogenase 2) is a mitochondrial enzyme catalyzing NAD+-dependent malate oxidation, functioning as a central hub in the tricarboxylic acid (TCA) cycle and malate-aspartate shuttle 12. MDH2 activity is dynamically regulated by post-translational modifications: palmitoylation by ZDHHC18 enhances activity and mitochondrial respiration 2, while lactylation impairs mitochondrial function 3, and deacetylation by Sirt3 reduces activity 1. Deubiquitination by USP5 increases MDH2 stability 4. Clinically, MDH2 dysregulation contributes to multiple pathologies. In myocardial ischemia-reperfusion injury, MDH2 lactylation induces ferroptosis; dexmedetomidine ameliorates injury by reducing lactylation 3. Decreased MDH2 activity impairs TCA cycle flux, causing fibroblast-like synoviocyte senescence and osteoarthritis progression 1. In cancer, elevated MDH2 activity supports oxidative phosphorylation in ovarian cancer 2 and glioblastoma stem cells, with the latter involving epitranscriptomic remodeling via Ξ±-ketoglutarate and m6A methylation 5. Conversely, MDH2 inhibition by glibenclamide delays aging through metabolic-epigenetic regulation 6. MDH2 also interacts with fructose-1,6-bisphosphate, functioning in glucose signaling 7, and is present on large extracellular vesicles 8.

Sources cited
1
MDH2 lactylation induces ferroptosis and impairs mitochondrial function in myocardial ischemia-reperfusion injury; dexmedetomidine reduces lactylation
PMID: 39467114
2
Decreased MDH2 activity (via Sirt3-mediated deacetylation) impairs TCA cycle flux, causing mitochondrial dysfunction and fibroblast-like synoviocyte senescence in osteoarthritis
PMID: 39738099
3
MDH2 palmitoylation at C138 by ZDHHC18 enhances TCA cycle activity and mitochondrial respiration in ovarian cancer
PMID: 35366151
4
MDH2 inhibition delays aging through metabolic-epigenetic regulation, enhancing histone methylation via methionine cycle flux
PMID: 39962087
5
Elevated MDH2 activity in glioblastoma stem cells supports malate-aspartate shuttle and suppresses epitranscriptomic remodeling via Ξ±-ketoglutarate and m6A demethylation
PMID: 39454581
6
MDH2 interacts with fructose-1,6-bisphosphate and participates in glucose signaling
PMID: 38775806
7
USP5-mediated deubiquitination of MDH2 increases protein stability and promotes ripretinib resistance in gastrointestinal stromal tumors
PMID: 38973363
8
MDH2 is present on the surface of large extracellular vesicles
PMID: 34817906
Disease Associationsβ“˜21
developmental and epileptic encephalopathy, 51Open Targets
0.78Strong
genetic developmental and epileptic encephalopathyOpen Targets
0.55Moderate
genetic disorderOpen Targets
0.49Moderate
Infantile encephalopathyOpen Targets
0.46Moderate
hereditary pheochromocytoma-paragangliomaOpen Targets
0.40Weak
atrial fibrillationOpen Targets
0.32Weak
developmental and epileptic encephalopathy, 1Open Targets
0.27Weak
infantile epileptic-dyskinetic encephalopathyOpen Targets
0.27Weak
infantile spasmsOpen Targets
0.27Weak
Spasticity - intellectual disability - X-linked epilepsyOpen Targets
0.27Weak
substance-related disorderOpen Targets
0.18Weak
opioid use disorderOpen Targets
0.14Weak
hepatocellular carcinomaOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.09Suggestive
non-small cell lung carcinomaOpen Targets
0.09Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.08Suggestive
coffee consumptionOpen Targets
0.07Suggestive
endometrial carcinomaOpen Targets
0.06Suggestive
cancerOpen Targets
0.06Suggestive
Developmental and epileptic encephalopathy 51UniProt
Pathogenic Variants20
NM_005918.4(MDH2):c.157dup (p.Leu53fs)Pathogenic
not provided|Inborn genetic diseases|Developmental and epileptic encephalopathy, 51
β˜…β˜…β˜†β˜†2025β†’ Residue 53
NM_005918.4(MDH2):c.167_168del (p.Leu55_Tyr56insTer)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 55
NM_005918.4(MDH2):c.291del (p.Ile98fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 98
NM_005918.4(MDH2):c.571C>T (p.Arg191Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 191
NM_005918.4(MDH2):c.633+1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_005918.4(MDH2):c.489del (p.Asn164fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 164
NM_005918.4(MDH2):c.320-1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_005918.4(MDH2):c.205dup (p.Ser69fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 69
NM_005918.4(MDH2):c.734-1G>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_005918.4(MDH2):c.543del (p.Ala182fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 182
NM_005918.4(MDH2):c.236-2A>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_005918.4(MDH2):c.591del (p.Ile197fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 197
NM_005918.4(MDH2):c.429+1G>TPathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_005918.4(MDH2):c.733+2T>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_005918.4(MDH2):c.566del (p.Pro189fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2021β†’ Residue 189
NM_005918.4(MDH2):c.556-1G>CLikely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2021
NM_005918.4(MDH2):c.884G>T (p.Gly295Val)Likely pathogenic
Developmental and epileptic encephalopathy, 51
β˜…β˜†β˜†β˜†2021β†’ Residue 295
NM_005918.4(MDH2):c.596del (p.Gly199fs)Pathogenic
Developmental and epileptic encephalopathy, 51|Infantile encephalopathy
β˜…β˜†β˜†β˜†β†’ Residue 199
NM_005918.4(MDH2):c.620C>T (p.Pro207Leu)Pathogenic
Developmental and epileptic encephalopathy, 51|Infantile encephalopathy
β˜†β˜†β˜†β˜†2024β†’ Residue 207
NM_005918.4(MDH2):c.109G>A (p.Gly37Arg)Pathogenic
Developmental and epileptic encephalopathy, 51
β˜†β˜†β˜†β˜†2020β†’ Residue 37
View on ClinVar β†—
Related Genes
GOT1Protein interaction100%GOT2Protein interaction100%NDUFV1Protein interaction100%CYC1Protein interaction100%COX5AProtein interaction100%OGDHProtein interaction100%
Tissue Expression6 tissues
Heart
100%
Liver
67%
Brain
37%
Lung
29%
Ovary
23%
Bone Marrow
13%
Gene Interaction Network
Click a node to explore
MDH2GOT1GOT2NDUFV1CYC1COX5AOGDH
PROTEIN STRUCTURE
Preparing viewer…
PDB2DFD Β· 1.90 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.98LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.70 [0.51–0.98]
RankingsWhere MDH2 stands among ~20K protein-coding genes
  • #2,110of 20,598
    Most Researched200 Β· top quartile
  • #2,182of 5,498
    Most Pathogenic Variants20
  • #9,401of 17,882
    Most Constrained (LOEUF)0.98
Genes detectedMDH2
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Dexmedetomidine Ameliorates Myocardial Ischemia-Reperfusion Injury by Inhibiting MDH2 Lactylation via Regulating Metabolic Reprogramming.
PMID: 39467114
Adv Sci (Weinh) Β· 2024
1.00
2
GATD3A-deficiency-induced mitochondrial dysfunction facilitates senescence of fibroblast-like synoviocytes and osteoarthritis progression.
PMID: 39738099
Nat Commun Β· 2024
0.90
3
Palmitoylation of MDH2 by ZDHHC18 activates mitochondrial respiration and accelerates ovarian cancer growth.
PMID: 35366151
Sci China Life Sci Β· 2022
0.80
4
Glibenclamide targets MDH2 to relieve aging phenotypes through metabolism-regulated epigenetic modification.
PMID: 39962087
Signal Transduct Target Ther Β· 2025
0.70
5
MDH2 Promotes Hepatocellular Carcinoma Growth Through Ferroptosis Evasion via Stabilizing GPX4.
PMID: 39519171
Int J Mol Sci Β· 2024
0.68