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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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CNGA1
cyclic nucleotide gated channel subunit alpha 1
Chromosome 4 Β· 4p12
NCBI Gene: 1259Ensembl: ENSG00000198515.17HGNC: HGNC:2148UniProt: P29973
29PubMed Papers
21Diseases
0Drugs
83Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelTransporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingintracellularly cAMP-activated cation channel activitycAMP bindingcGMP bindingretinitis pigmentosaretinitis pigmentosa 49Retinal dystrophyCNGA1-related retinopathy
✦AI Summary

CNGA1 encodes the pore-forming alpha subunit of the rod cyclic nucleotide-gated (CNG) channel, a ligand-gated cation channel essential for phototransduction 1. In darkness, elevated cGMP levels maintain channel opening, allowing steady inward Na+ and Ca2+ currents that depolarize the rod photoreceptor membrane and promote neurotransmitter release. Upon light exposure, cGMP levels decline, closing the channel and hyperpolarizing the membrane to signal light detection 2. The channel exhibits cGMP- and cAMP-dependent gating with selective permeability for monovalent and divalent cations, including voltage-dependent Ca2+ blockade mediated by specific selectivity filter residues 2. Autosomal recessive CNGA1 mutations cause retinitis pigmentosa (RP), accounting for 2-8% of autosomal recessive RP cases 3. Pathogenic variants disrupt phototransduction, leading to progressive rod photoreceptor degeneration and vision loss 4. CNGA1 mutations have been identified across diverse populations, including Chinese and Indian cohorts, with variants affecting critical cGMP-binding domains 564. Gene augmentation therapy using AAV8-delivered CNGA1 successfully restores retinal function and preserves photoreceptors in animal models, demonstrating therapeutic potential 3.

Sources cited
1
CNGA1 encodes the alpha subunit of the rod CNG channel, a ligand-gated cation channel controlled by cGMP, and autosomal mutations cause retinitis pigmentosa
PMID: 37054604
2
Structural mechanisms of CNGA1 gating and ion selectivity, including Ca2+ binding sites in the selectivity filter and voltage-dependent gating properties
PMID: 33651975
3
CNGA1 mutations account for 2-8% of autosomal recessive RP; gene augmentation therapy restores vision and preserves photoreceptors in animal models
PMID: 40897815
4
CNGA1 mutations affecting the cGMP-binding domain cause autosomal recessive retinitis pigmentosa with progressive photoreceptor degeneration
PMID: 36115851
5
CNGA1 mutations identified as disease-causing variants in patients with inherited retinal degeneration in Chinese populations
PMID: 29625443
6
CNGA1 identified as one of 15 genes harboring disease-causing variants in Chinese families with retinitis pigmentosa
PMID: 31960602
Disease Associationsβ“˜21
retinitis pigmentosaOpen Targets
0.72Strong
retinitis pigmentosa 49Open Targets
0.70Strong
Retinal dystrophyOpen Targets
0.55Moderate
CNGA1-related retinopathyOpen Targets
0.46Moderate
Cone rod dystrophyOpen Targets
0.28Weak
cone-rod dystrophyOpen Targets
0.27Weak
placental retentionOpen Targets
0.26Weak
Macular dystrophyOpen Targets
0.26Weak
diabetes mellitusOpen Targets
0.23Weak
type 2 diabetes mellitusOpen Targets
0.23Weak
goutOpen Targets
0.23Weak
sign or symptomOpen Targets
0.22Weak
genetic disorderOpen Targets
0.19Weak
Posterior column ataxia - retinitis pigmentosaOpen Targets
0.16Weak
Familial prostate cancerOpen Targets
0.11Weak
optic atrophyOpen Targets
0.11Weak
prostate cancerOpen Targets
0.11Weak
age-related macular degenerationOpen Targets
0.09Suggestive
self-injurious ideationOpen Targets
0.09Suggestive
X-linked retinal dysplasiaOpen Targets
0.09Suggestive
Retinitis pigmentosa 49UniProt
Pathogenic Variants83
NM_001379270.1(CNGA1):c.253del (p.Leu85fs)Pathogenic
Retinitis pigmentosa 49|not provided|Retinal dystrophy|Retinitis pigmentosa;Retinitis pigmentosa 49|Retinitis pigmentosa
β˜…β˜…β˜†β˜†2026β†’ Residue 85
NM_001379270.1(CNGA1):c.947C>T (p.Ser316Phe)Pathogenic
Retinitis pigmentosa 49|Macular dystrophy|Cone-rod dystrophy|not provided|Retinitis pigmentosa|See cases|Retinal dystrophy|CNGA1-related disorder|Retinal disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 316
NM_001379270.1(CNGA1):c.1327dup (p.Thr443fs)Pathogenic
not provided|Retinal dystrophy|CNGA1-related disorder|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2026β†’ Residue 443
NM_001379270.1(CNGA1):c.530del (p.Thr177fs)Pathogenic
not provided|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2026β†’ Residue 177
NM_001379270.1(CNGA1):c.640C>T (p.Arg214Ter)Pathogenic
Retinitis pigmentosa|not provided|Retinitis pigmentosa 49|Retinal dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 214
NM_001379270.1(CNGA1):c.1528C>T (p.Arg510Ter)Pathogenic
Retinal dystrophy|Retinitis pigmentosa|not provided|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2026β†’ Residue 510
NM_001379270.1(CNGA1):c.234C>A (p.Tyr78Ter)Pathogenic
Retinitis pigmentosa|not provided|Retinitis pigmentosa 49|CNGA1-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 78
NM_001379270.1(CNGA1):c.1722del (p.Asp575fs)Pathogenic
not provided|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2025β†’ Residue 575
NM_001379270.1(CNGA1):c.105C>A (p.Cys35Ter)Pathogenic
Retinal dystrophy|not provided|CNGA1-related disorder|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2025β†’ Residue 35
NM_001379270.1(CNGA1):c.82C>T (p.Arg28Ter)Pathogenic
Retinitis pigmentosa 49|Retinal dystrophy|Retinitis pigmentosa|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 28
NM_001379270.1(CNGA1):c.1743_1746del (p.Thr582fs)Pathogenic
Retinal dystrophy|not provided|Retinitis pigmentosa|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2025β†’ Residue 582
NM_001379270.1(CNGA1):c.1258C>T (p.Arg420Ter)Pathogenic
Retinal dystrophy|not provided|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2025β†’ Residue 420
NM_001379270.1(CNGA1):c.1327del (p.Thr443fs)Pathogenic
Retinitis pigmentosa 49|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 443
NM_001379270.1(CNGA1):c.1617C>G (p.Tyr539Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 539
NM_001379270.1(CNGA1):c.1003_1007del (p.Asn334_Asp335insTer)Pathogenic
not provided|Retinitis pigmentosa
β˜…β˜…β˜†β˜†2025β†’ Residue 334
NM_001379270.1(CNGA1):c.1873C>T (p.Arg625Ter)Pathogenic
not provided|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2025β†’ Residue 625
NM_001379270.1(CNGA1):c.528del (p.Asn175_Trp176insTer)Pathogenic
not provided|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2024β†’ Residue 175
NM_001379270.1(CNGA1):c.816dup (p.Arg273fs)Likely pathogenic
not provided|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2024β†’ Residue 273
NM_001379270.1(CNGA1):c.527G>A (p.Trp176Ter)Pathogenic
not provided|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2024β†’ Residue 176
NM_001379270.1(CNGA1):c.107+2T>GLikely pathogenic
not provided|Retinitis pigmentosa 49
β˜…β˜…β˜†β˜†2024
View on ClinVar β†—
Related Genes
CALM3Protein interaction100%CALML4Protein interaction96%CALML6Protein interaction96%CALML3Protein interaction96%CALML5Protein interaction96%GUCA1BProtein interaction94%
Tissue Expression6 tissues
Liver
100%
Heart
9%
Brain
1%
Lung
1%
Ovary
1%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CNGA1CALM3CALML4CALML6CALML3CALML5GUCA1B
PROTEIN STRUCTURE
Preparing viewer…
PDB7LFT Β· 2.60 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.78LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.57 [0.41–0.78]
RankingsWhere CNGA1 stands among ~20K protein-coding genes
  • #12,126of 20,598
    Most Researched29
  • #900of 5,498
    Most Pathogenic Variants83 Β· top quartile
  • #6,378of 17,882
    Most Constrained (LOEUF)0.78
Genes detectedCNGA1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Comprehensive Molecular Screening in Chinese Usher Syndrome Patients.
PMID: 29625443
Invest Ophthalmol Vis Sci Β· 2018
1.00
2
PMID: 20301590
0.90
3
Gene augmentation therapy restores vision and preserves photoreceptors in a mouse model of CNGA1-retinitis pigmentosa.
PMID: 40897815
Commun Med (Lond) Β· 2025
0.80
4
Application of targeted panel sequencing and whole exome sequencing for 76 Chinese families with retinitis pigmentosa.
PMID: 31960602
Mol Genet Genomic Med Β· 2020
0.70
5
Monogenic Retinal Diseases Associated With Genes Encoding Phototransduction Proteins: A Review.
PMID: 40013354
Clin Exp Ophthalmol Β· 2025
0.60