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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CNGB3
cyclic nucleotide gated channel subunit beta 3
Chromosome 8 Β· 8q21.3
NCBI Gene: 54714Ensembl: ENSG00000170289.13HGNC: HGNC:2153UniProt: Q9NQW8
58PubMed Papers
22Diseases
0Drugs
276Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelTransporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
monoatomic cation transportintracellularly cGMP-activated cation channel activitycGMP bindingplasma membraneachromatopsiaachromatopsia 3severe early-childhood-onset retinal dystrophyRetinal dystrophy
✦AI Summary

CNGB3 encodes the beta subunit of the cone cyclic nucleotide-gated (CNG) channel, a pore-forming component essential for cone photoreception. In darkness, elevated intracellular cGMP levels keep the channel open, allowing inward Na+ and Ca2+ currents that depolarize the membrane and enable neurotransmitter release [UniProt]. Upon light absorption, cGMP levels decline, closing the channel and hyperpolarizing the membrane, thereby signaling light detection as the endpoint of the phototransduction cascade [UniProt]. CNGB3 mutations cause autosomal recessive achromatopsia (ACHM), a cone dysfunction syndrome affecting approximately 1 in 30,000 people 1. Up to 90% of achromatopsia patients carry mutations in CNGA3 or CNGB3 21. The condition manifests at birth or early infancy with poor visual acuity, nystagmus, photophobia, and complete color vision loss due to functional loss and progressive cone photoreceptor degeneration 21. CNGB3 mutations also associate with Stargardt disease 1, though the primary focus for gene therapy development targets CNGB3-linked achromatopsia 3. Currently, no FDA-approved treatment exists, but multiple gene therapy clinical trials at the phase I/II stage are underway for CNGB3-associated achromatopsia, with preclinical studies demonstrating anatomical and functional improvements in animal models 214.

Sources cited
1
Up to 90% of ACHM patients carry CNGB3 mutations; CNGB3 encodes the beta subunit of the cone CNG channel; mutations result in cone photoreceptor functional loss and degeneration; presents with decreased visual acuity, lack of color discrimination, photophobia, and nystagmus
PMID: 34860352
2
Achromatopsia affects 1 in 30,000 people; up to 90% carry CNGB3 mutations; CNGB3 encodes beta subunit of cone CNG channel in cone-specific phototransduction; presents at birth/early infancy with poor visual acuity, nystagmus, photophobia, and color vision loss; multiple phase I/II gene therapy clinical trials registered for CNGB3-linked achromatopsia
PMID: 39273686
3
CNGB3 founder variants identified as among the 20 most prevalent pathogenic IRD alleles in UK cohort; CNGB3-associated disease relevant for gene-directed therapies
PMID: 38219857
4
AAV gene therapy in mice models for achromatopsia with CNGB3 mutations shows promise; multiple cone-specific promoters developed; clinical trials underway for CNGB3 mutation treatment
PMID: 26196097
5
Achromatopsia caused by mutations in CNGB3 (cyclic nucleotide-gated channel beta 3) has entered clinical development for gene therapy
PMID: 28035529
Disease Associationsβ“˜22
achromatopsiaOpen Targets
0.80Strong
achromatopsia 3Open Targets
0.74Strong
severe early-childhood-onset retinal dystrophyOpen Targets
0.63Moderate
Retinal dystrophyOpen Targets
0.57Moderate
CNGB3-related retinopathyOpen Targets
0.49Moderate
genetic disorderOpen Targets
0.47Moderate
Abnormality of the eyeOpen Targets
0.47Moderate
Leber congenital amaurosisOpen Targets
0.46Moderate
Stargardt diseaseOpen Targets
0.42Moderate
color vision disorderOpen Targets
0.42Moderate
retinitis pigmentosaOpen Targets
0.37Weak
Progressive cone dystrophyOpen Targets
0.37Weak
retinopathyOpen Targets
0.34Weak
NystagmusOpen Targets
0.34Weak
optic atrophyOpen Targets
0.34Weak
Abnormal electroretinogramOpen Targets
0.34Weak
Cone rod dystrophyOpen Targets
0.33Weak
cone-rod dystrophyOpen Targets
0.33Weak
Varicose veinsOpen Targets
0.28Weak
placenta praeviaOpen Targets
0.26Weak
Achromatopsia 3UniProt
Stargardt disease 1UniProt
Pathogenic Variants276
NM_019098.5(CNGB3):c.644-1G>CPathogenic
Achromatopsia 3|not provided|Achromatopsia|Achromatopsia 3;Severe early-childhood-onset retinal dystrophy;Retinitis pigmentosa|CNGB3-related disorder
β˜…β˜…β˜†β˜†2026
NM_019098.5(CNGB3):c.391C>T (p.Gln131Ter)Pathogenic
Achromatopsia 3|not provided|Achromatopsia
β˜…β˜…β˜†β˜†2026β†’ Residue 131
NM_019098.5(CNGB3):c.1148del (p.Thr383fs)Pathogenic
Achromatopsia 3|not provided|Abnormality of the eye|Retinal dystrophy|Achromatopsia|Leber congenital amaurosis|CNGB3-related disorder|Cone-rod dystrophy|Retinitis pigmentosa|Inborn genetic diseases|Optic atrophy|Retinal disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 383
NM_019098.5(CNGB3):c.1663-1205G>APathogenic
Achromatopsia|Achromatopsia 3|not provided|Retinal dystrophy
β˜…β˜…β˜†β˜†2026
NM_019098.5(CNGB3):c.1432C>T (p.Arg478Ter)Pathogenic
Achromatopsia 3|Achromatopsia|Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 478
NM_019098.5(CNGB3):c.886_896delinsT (p.Thr296fs)Pathogenic
CNGB3-related disorder|not provided|Achromatopsia 3|Retinal dystrophy|Achromatopsia
β˜…β˜…β˜†β˜†2026β†’ Residue 296
NM_019098.5(CNGB3):c.1929-1G>ALikely pathogenic
not provided|Achromatopsia|Achromatopsia 3
β˜…β˜…β˜†β˜†2025
NM_019098.5(CNGB3):c.595del (p.Glu199fs)Pathogenic
not provided|Achromatopsia 3|Achromatopsia
β˜…β˜…β˜†β˜†2025β†’ Residue 199
NM_019098.5(CNGB3):c.29dup (p.Val11fs)Pathogenic
Achromatopsia 3|not provided|Achromatopsia
β˜…β˜…β˜†β˜†2025β†’ Residue 11
NM_019098.5(CNGB3):c.1574_1575del (p.Leu524_Phe525insTer)Pathogenic
not provided|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 524
NM_019098.5(CNGB3):c.646C>T (p.Arg216Ter)Pathogenic
Achromatopsia 3|not provided|Achromatopsia
β˜…β˜…β˜†β˜†2025β†’ Residue 216
NM_019098.5(CNGB3):c.1578+1G>TPathogenic
Achromatopsia 3|not provided|Achromatopsia
β˜…β˜…β˜†β˜†2025
NM_019098.5(CNGB3):c.819_826del (p.Arg274fs)Pathogenic
Nystagmus;Abnormal electroretinogram|Achromatopsia 3|not provided|Achromatopsia|Retinal dystrophy|Leber congenital amaurosis
β˜…β˜…β˜†β˜†2025β†’ Residue 274
NM_019098.5(CNGB3):c.2T>C (p.Met1Thr)Pathogenic
Achromatopsia 3|not provided|Achromatopsia
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_019098.5(CNGB3):c.1578+1G>APathogenic
Achromatopsia 3|Achromatopsia|not provided|CNGB3-related disorder|Retinal dystrophy
β˜…β˜…β˜†β˜†2025
NM_019098.5(CNGB3):c.839dup (p.Gly281fs)Pathogenic
not provided|Achromatopsia 3|Achromatopsia
β˜…β˜…β˜†β˜†2025β†’ Residue 281
NM_019098.5(CNGB3):c.446_447insT (p.Lys149fs)Pathogenic
Achromatopsia 3|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 149
NM_019098.5(CNGB3):c.852+1G>CPathogenic
Achromatopsia 3|not provided|Achromatopsia
β˜…β˜…β˜†β˜†2025
NM_019098.5(CNGB3):c.2181_2184del (p.Glu729fs)Pathogenic
not provided|Achromatopsia 3|Achromatopsia
β˜…β˜…β˜†β˜†2025β†’ Residue 729
NM_019098.5(CNGB3):c.208C>T (p.Gln70Ter)Pathogenic
Achromatopsia 3|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 70
View on ClinVar β†—
Related Genes
CNGA2Protein interaction100%CNGA4Protein interaction100%ELOVL4Protein interaction86%OPN4Protein interaction84%GNAT2Protein interaction82%PDE6CProtein interaction79%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
16%
Brain
15%
Heart
9%
Lung
4%
Liver
4%
Gene Interaction Network
Click a node to explore
CNGB3CNGA2CNGA4ELOVL4OPN4GNAT2PDE6C
PROTEIN STRUCTURE
Preparing viewer…
PDB7RHS Β· 2.93 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.04LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.85 [0.70–1.04]
RankingsWhere CNGB3 stands among ~20K protein-coding genes
  • #7,849of 20,598
    Most Researched58
  • #228of 5,498
    Most Pathogenic Variants276 Β· top 5%
  • #10,413of 17,882
    Most Constrained (LOEUF)1.04
Genes detectedCNGB3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Spectrum of Genetic Variants in the Most Common Genes Causing Inherited Retinal Disease in a Large Molecularly Characterized United Kingdom Cohort.
PMID: 38219857
Ophthalmol Retina Β· 2024
1.00
2
Achromatopsia: Genetics and Gene Therapy.
PMID: 34860352
Mol Diagn Ther Β· 2022
0.90
3
Gene Therapy for Achromatopsia.
PMID: 39273686
Int J Mol Sci Β· 2024
0.80
4
Phenotyping and genotyping inherited retinal diseases: Molecular genetics, clinical and imaging features, and therapeutics of macular dystrophies, cone and cone-rod dystrophies, rod-cone dystrophies, Leber congenital amaurosis, and cone dysfunction syndromes.
PMID: 38278208
Prog Retin Eye Res Β· 2024
0.70
5
Long-Range PCR-Based NGS Applications to Diagnose Mendelian Retinal Diseases.
PMID: 33546218
Int J Mol Sci Β· 2021
0.60