HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CNN1
calponin 1
Chromosome 19 · 19p13.2
NCBI Gene: 1264Ensembl: ENSG00000130176.8HGNC: HGNC:2155UniProt: B7Z7E1
55PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
focal adhesionprotein bindingnegative regulation of vascular associated smooth muscle cell proliferationcytoskeletonneurodegenerative diseaseself-injurious ideationbreast cancerneoplasm
✦AI Summary

CNN1 (calponin 1) is a thin filament-associated protein primarily expressed in smooth muscle cells that regulates contractility through inhibition of actin-activated myosin ATPase activity 1. As an actin-binding protein, CNN1 stabilizes the actin cytoskeleton and fine-tunes smooth muscle contractility 1. The protein interacts with actin, calmodulin, and tropomyosin to modulate contraction dynamics 1. Beyond its classical smooth muscle role, CNN1 is expressed in vascular myofibroblasts and stromal cells associated with disease pathology. In atherosclerosis, CNN1 marks smooth muscle cell contractile phenotype; DT-109 treatment upregulated CNN1 expression while suppressing atherosclerotic lesion formation and calcification in nonhuman primates 2. CNN1 serves as a novel prognostic marker in colon cancer-associated stromal cells, where elevated expression correlates with poor patient outcomes 3. Recent mechanistic studies reveal CNN1 participates in epigenetic regulation: the Kdm6a-CNN1 axis controls microvascular endothelial cell senescence and inflammation following spinal cord injury, with CNN1 deletion reducing senescence-associated inflammatory factor secretion and improving neurological recovery 4. In adenomyosis, CNN1+ stromal fibroblasts promote fibrosis through fibroblast-to-myofibroblast transition 5. NKX2-5 suppresses CNN1 expression during pathological vascular remodeling in pulmonary arterial hypertension 6. These findings establish CNN1 as a multifunctional regulator linking smooth muscle biology to disease-relevant cellular differentiation and inflammation.

Sources cited
1
CNN1 is expressed in smooth muscle cells, inhibits actin-activated myosin ATPase, stabilizes actin cytoskeleton, and fine-tunes smooth muscle contractility through actin binding
PMID: 26970176
2
DT-109 treatment upregulated CNN1 expression in coronary arteries and suppressed atherosclerotic lesion formation and calcification in nonhuman primates
PMID: 40195303
3
CNN1 expression is upregulated in tumor-associated stromal cells compared to healthy stromal cells and is associated with poor prognosis in colon cancer
PMID: 35454931
4
CNN1 forms an epigenetic regulatory axis with Kdm6a/UTX that controls microvascular endothelial cell senescence, SASP secretion, and neuroinflammation after spinal cord injury
PMID: 38528029
5
CNN1+ stromal fibroblasts in adenomyotic lesions induce fibrosis through fibroblast-to-myofibroblast transition
PMID: 40190183
6
CNN1 is a contractile gene suppressed by NKX2-5 overexpression in vascular smooth muscle cell phenotypic modulation during pathological vascular remodeling
PMID: 38652537
7
CNN1 exhibits genetic interaction with CBL in driving erythroid differentiation as identified through Perturb-seq analysis
PMID: 31395745
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.36Weak
self-injurious ideationOpen Targets
0.21Weak
breast cancerOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.09Suggestive
cancerOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.05Suggestive
colorectal cancerOpen Targets
0.05Suggestive
gastric cancerOpen Targets
0.05Suggestive
Barrett's esophagusOpen Targets
0.05Suggestive
leukemiaOpen Targets
0.05Suggestive
breast carcinomaOpen Targets
0.04Suggestive
Metaphyseal chondrodysplasia, Schmid typeOpen Targets
0.04Suggestive
Schmid metaphyseal chondrodysplasiaOpen Targets
0.04Suggestive
Hypocalcemic vitamin D-resistant ricketsOpen Targets
0.04Suggestive
spondyloepimetaphyseal dysplasia, Missouri typeOpen Targets
0.03Suggestive
Weismann-Netter syndromeOpen Targets
0.03Suggestive
systemic sclerodermaOpen Targets
0.03Suggestive
posterior cortical atrophyOpen Targets
0.03Suggestive
gastric adenocarcinomaOpen Targets
0.03Suggestive
esophageal adenocarcinomaOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MYH11Protein interaction100%MYL9Protein interaction97%TAGLNProtein interaction95%CALM3Protein interaction95%CALML3Protein interaction95%CALML5Protein interaction95%
Tissue Expression6 tissues
Heart
100%
Lung
20%
Ovary
17%
Liver
2%
Brain
1%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CNN1MYH11MYL9TAGLNCALM3CALML3CALML5
PROTEIN STRUCTURE
Preparing viewer…
PDB1WYP · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.81LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.56 [0.40–0.81]
RankingsWhere CNN1 stands among ~20K protein-coding genes
  • #8,184of 20,598
    Most Researched55
  • #6,816of 17,882
    Most Constrained (LOEUF)0.81
Genes detectedCNN1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Exploring genetic interaction manifolds constructed from rich single-cell phenotypes.
PMID: 31395745
Science · 2019
1.00
2
Calponin isoforms CNN1, CNN2 and CNN3: Regulators for actin cytoskeleton functions in smooth muscle and non-muscle cells.
PMID: 26970176
Gene · 2016
0.90
3
Identification of TPM2 and CNN1 as Novel Prognostic Markers in Functionally Characterized Human Colon Cancer-Associated Stromal Cells.
PMID: 35454931
Cancers (Basel) · 2022
0.80
4
Human Plaque Myofibroblasts to Study Mechanisms of Atherosclerosis.
PMID: 37889192
J Am Heart Assoc · 2023
0.70
5
Kdm6a-CNN1 axis orchestrates epigenetic control of trauma-induced spinal cord microvascular endothelial cell senescence to balance neuroinflammation for improved neurological repair.
PMID: 38528029
Bone Res · 2024
0.60