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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CNN3
calponin 3
Chromosome 1 · 1p21.3
NCBI Gene: 1266Ensembl: ENSG00000117519.17HGNC: HGNC:2157UniProt: Q15417
103PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
actin cytoskeletonadherens junctionfocal adhesioncadherin binding involved in cell-cell adhesionneurodegenerative diseasepleural empyemapneumothoraxbiliary tract disease
✦AI Summary

CNN3 (calponin 3) is an actin-binding protein that regulates actin cytoskeleton organization and contractility across multiple cell types. As an actin filament-associated protein, CNN3 inhibits actin-activated myosin ATPase activity and stabilizes the actin cytoskeleton 1. In smooth muscle and non-muscle cells, CNN3 participates in cytoskeleton-based activities, with cell type-specific functions regulated by phosphorylation at Ser293/296 in its C-terminal region 2. Structurally, CNN3 localizes dynamically to contractile stress fibers and is critical for coordinating their contractility; CNN3 depletion results in increased, uncoordinated stress fiber contraction and bundle breakage 3. During trophoblast fusion, CNN3 acts as a negative regulator—its phosphorylation-dependent dissociation from F-actin promotes actin cytoskeletal rearrangement required for cell fusion 2. Clinically, CNN3 expression is significantly elevated in glioblastoma and lower-grade gliomas compared to normal brain tissue, correlating with higher WHO grade and poor prognosis 4. CNN3 knockdown inhibited glioma cell proliferation, migration, and invasion through NF-κB pathway suppression 4. Similarly, elevated CNN3 promotes cervical cancer cell proliferation and metastasis via the RPLP1 pathway 5. Bioinformatics studies indicate CNN3 correlates with immune checkpoint molecules and inflammatory pathways, positioning it as a potential immunotherapy target 67.

Sources cited
1
CNN3 is an actin-binding protein with functions in inhibiting actin-activated myosin ATPase and stabilizing actin cytoskeleton; participates in embryonic development and myogenesis; regulation by phosphorylation
PMID: 26970176
2
CNN3 phosphorylation at Ser293/296 in C-terminal region regulates dissociation from F-actin; CNN3 acts as negative regulator of trophoblast fusion through actin cytoskeleton rearrangement
PMID: 20861310
3
CNN3 is critical for coordinated contractility of stress fibers; CNN3 depletion causes increased and uncoordinated stress fiber contractility leading to bundle breakage
PMID: 30518778
4
CNN3 mRNA and protein levels are elevated in glioblastoma and lower-grade gliomas; high CNN3 correlates with WHO grade and poor survival; CNN3 knockdown inhibits glioma cell proliferation, migration, invasion via NF-κB pathway
PMID: 35792226
5
CNN3 is enriched in gliomas; high expression correlates with worse prognosis and inflammatory/immune activities; may be immunotherapy target
PMID: 34797350
6
CNN3 is elevated in cervical cancer; promotes cancer cell viability, migration, and invasion; acts as oncogene through RPLP1 pathway
PMID: 32051425
7
CNN3 identified as one of eight key genes in immunogenic cell death-related signature for bladder cancer prognosis and prognostic stratification
PMID: 40330458
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.49Moderate
pleural empyemaOpen Targets
0.32Weak
pneumothoraxOpen Targets
0.32Weak
biliary tract diseaseOpen Targets
0.31Weak
tooth diseaseOpen Targets
0.28Weak
response to xenobiotic stimulusOpen Targets
0.11Weak
frozen shoulderOpen Targets
0.10Weak
osteosarcomaOpen Targets
0.09Suggestive
gliomaOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
cervical cancerOpen Targets
0.08Suggestive
diffuse large B-cell lymphomaOpen Targets
0.07Suggestive
systemic sclerodermaOpen Targets
0.07Suggestive
cancerOpen Targets
0.06Suggestive
neoplasmOpen Targets
0.06Suggestive
gastric cancerOpen Targets
0.05Suggestive
neural tube defects, folate-sensitiveOpen Targets
0.04Suggestive
anencephaly 1Open Targets
0.04Suggestive
Isolated anencephaly/exencephalyOpen Targets
0.04Suggestive
Spina bifida - hypospadiasOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
WDR90Protein interaction78%TAGLN2Shared pathway50%CNN2Shared pathway33%CNN1Shared pathway33%TMOD3Shared pathway29%TMSB15CShared pathway25%
Tissue Expression6 tissues
Ovary
100%
Brain
93%
Lung
73%
Heart
72%
Liver
71%
Bone Marrow
5%
Gene Interaction Network
Click a node to explore
CNN3WDR90TAGLN2CNN2CNN1TMOD3TMSB15C
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q15417
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.43Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.25 [0.16–0.43]
RankingsWhere CNN3 stands among ~20K protein-coding genes
  • #4,639of 20,598
    Most Researched103 · top quartile
  • #2,314of 17,882
    Most Constrained (LOEUF)0.43 · top quartile
Genes detectedCNN3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Calponin isoforms CNN1, CNN2 and CNN3: Regulators for actin cytoskeleton functions in smooth muscle and non-muscle cells.
PMID: 26970176
Gene · 2016
1.00
2
Molecules That Have Rarely Been Studied in Lymphatic Endothelial Cells.
PMID: 39596293
Int J Mol Sci · 2024
0.90
3
Advancing personalized, predictive, and preventive medicine in bladder cancer: a multi-omics and machine learning approach for novel prognostic modeling, immune profiling, and therapeutic target discovery.
PMID: 40330458
Front Immunol · 2025
0.80
4
Calponin 3 regulates actin cytoskeleton rearrangement in trophoblastic cell fusion.
PMID: 20861310
Mol Biol Cell · 2010
0.70
5
Calponin 3 Acts as a Potential Diagnostic and Prognostic Marker and Promotes Glioma Cell Proliferation, Migration, and Invasion.
PMID: 35792226
World Neurosurg · 2022
0.60