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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CNNM3
cyclin and CBS domain divalent metal cation transport mediator 3
Chromosome 2 · 2q11.2
NCBI Gene: 26505Ensembl: ENSG00000168763.17HGNC: HGNC:104UniProt: Q8NE01
67PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
membraneprotein bindingtransmembrane transporter activitymagnesium ion homeostasisneurodegenerative diseasemathematical abilityCrohn's diseasebipolar disorder
✦AI Summary

CNNM3 (cyclin and CBS domain divalent metal cation transport mediator 3) is a magnesium transporter that plays crucial roles in cellular magnesium homeostasis and oncogenesis. The protein functions as a magnesium transporter, with its activity regulated through interactions with phosphatase of regenerating liver (PRL) proteins, particularly PRL-2 1. CNNM3 forms functional heterodimers with PRL-2 through a unique loop in its CBS domain, and this interaction is essential for regulating intracellular magnesium levels and magnesium influx 1. The protein's transport activity is also modulated by ARL15, which promotes complex N-glycosylation of CNNM3 and negatively regulates magnesium uptake 2. CNNM3 has significant disease relevance, particularly in cancer. Low CNNM3 expression is associated with poor prognosis in kidney renal clear cell carcinoma (KIRC), and CNNM3 knockdown promotes cancer cell proliferation and migration while increasing intracellular magnesium and iron levels 3. The protein demonstrates pro-oncogenic properties, with its expression correlating positively with tumor proliferative index in breast cancer 1. Clinically, CNNM3 represents a potential therapeutic target, as disruption of PRL-CNNM3 interactions decreases cancer proliferation, and the protein's role in ferroptosis sensitivity offers new treatment strategies for cancers with low CNNM3 expression 34.

Sources cited
1
CNNM3 forms functional heterodimers with PRL-2 and regulates intracellular magnesium levels
PMID: 24632616
2
Low CNNM3 expression is associated with poor prognosis in KIRC and its knockdown promotes cancer cell proliferation
PMID: 40824137
3
ARL15 modulates CNNM3 activity through N-glycosylation and negatively regulates magnesium uptake
PMID: 34089346
4
Disruption of PRL-CNNM3 interactions decreases breast cancer proliferation
PMID: 26969161
5
CNNM3 binds to PRL proteins through its CBS domain
PMID: 32733084
6
CNNM3 is involved in cisplatin resistance in lung adenocarcinoma
PMID: 30457021
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.24Weak
mathematical abilityOpen Targets
0.21Weak
Crohn's diseaseOpen Targets
0.16Weak
bipolar disorderOpen Targets
0.14Weak
neoplasmOpen Targets
0.07Suggestive
cholangiocarcinomaOpen Targets
0.05Suggestive
appendicitisOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
cervical cancerOpen Targets
0.01Suggestive
posterior cortical atrophyOpen Targets
0.01Suggestive
kidney cancerOpen Targets
0.01Suggestive
Parkinson diseaseOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.00Suggestive
clear cell renal carcinomaOpen Targets
0.00Suggestive
colorectal cancerOpen Targets
0.00Suggestive
papillary renal cell carcinomaOpen Targets
0.00Suggestive
meningococcal infectionOpen Targets
0.00Suggestive
cone-rod dystrophyOpen Targets
0.00Suggestive
hypertensionOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CNNM1Shared pathway100%PTP4A2Protein interaction100%PTP4A3Protein interaction95%CBSProtein interaction84%PTP4A1Protein interaction80%GMPSProtein interaction70%
Tissue Expression6 tissues
Liver
100%
Ovary
70%
Lung
49%
Heart
39%
Brain
36%
Bone Marrow
33%
Gene Interaction Network
Click a node to explore
CNNM3CNNM1PTP4A2PTP4A3CBSPTP4A1GMPS
PROTEIN STRUCTURE
Preparing viewer…
PDB6DFD · 1.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.23LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.97 [0.77–1.23]
RankingsWhere CNNM3 stands among ~20K protein-coding genes
  • #6,971of 20,598
    Most Researched67
  • #12,949of 17,882
    Most Constrained (LOEUF)1.23
Genes detectedCNNM3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Downregulation of Mg
PMID: 40824137
FASEB J · 2025
1.00
2
A FRET-based screening method to detect potential inhibitors of the binding of CNNM3 to PRL2.
PMID: 32733084
Sci Rep · 2020
0.90
3
The protein tyrosine phosphatase PRL-2 interacts with the magnesium transporter CNNM3 to promote oncogenesis.
PMID: 24632616
Oncogene · 2015
0.80
4
Inhibition of PRL-2·CNNM3 Protein Complex Formation Decreases Breast Cancer Proliferation and Tumor Growth.
PMID: 26969161
J Biol Chem · 2016
0.70
5
A distal convoluted tubule-specific isoform of murine SLC41A3 extrudes magnesium.
PMID: 39931759
Acta Physiol (Oxf) · 2025
0.60