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GeneE
5 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CNOT11
CCR4-NOT transcription complex subunit 11
Chromosome 2 · 2q11.2
NCBI Gene: 55571Ensembl: ENSG00000158435.9HGNC: HGNC:25217UniProt: Q9UKZ1
60PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
CCR4-NOT complexprotein bindingcytosolnuclear-transcribed mRNA poly(A) tail shorteningneurodegenerative diseaseovarian neoplasmasthmachildhood onset asthma
✦AI Summary

CNOT11 is a structural subunit of the CCR4-NOT complex, the primary mRNA deadenylase responsible for bulk mRNA degradation and regulated mRNA decay in eukaryotes 1. As part of the N-terminal module with CNOT1 and CNOT10, CNOT11 functions as a protein-protein interaction platform rather than directly catalyzing deadenylation 2. Its conserved antenna domain recruits regulatory proteins like GGNBP2 and enables complex engagement with ribosome-associated decay pathways 32. CNOT11 is essential for CNOT10 association with the complex and participates in multiple cellular processes including miRNA-mediated repression, translational regulation, and transcription control 1. Mechanistically, CNOT11 acts as a molecular relay in tubulin mRNA decay, where ribosomal nascent polypeptide recognition is linked to deadenylase recruitment through protein-protein interactions 3. Disease relevance is evident through mutations in CNOT11-interacting partner GGNBP2, which impair chromosome 2 and cause intellectual disability and retinitis pigmentosa 3. Additionally, CNOT11 participates in innate immune responses by regulating cytoplasmic dsRNA sensing and type I interferon signaling 4, suggesting involvement in autoimmune and autoinflammatory pathways.

Sources cited
1
CNOT11 is a bona fide subunit of the human CCR4-NOT complex required for CNOT10 association and module assembly
PMID: 23232451
2
CNOT11 protruding antenna domain functions as a protein-protein interaction platform within the N-terminal module
PMID: 36586408
3
CNOT11 recruits CCR4-NOT complex to ribosomes via SCAPER for tubulin mRNA decay; GGNBP2 mutations affecting this pathway cause intellectual disability and retinitis pigmentosa
PMID: 37295431
4
CNOT11 contains a proline-rich motif critical for hierarchical module assembly with CNOT10 and CNOT1
PMID: 37460791
5
CNOT11 participates in innate immune regulation by modifying dsRNA sensing and type I interferon signaling pathways
PMID: 39576872
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.49Moderate
ovarian neoplasmOpen Targets
0.08Suggestive
asthmaOpen Targets
0.03Suggestive
atopic asthmaOpen Targets
0.03Suggestive
childhood onset asthmaOpen Targets
0.03Suggestive
lower respiratory tract diseaseOpen Targets
0.03Suggestive
migraine with auraOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
pulmonary tuberculosisOpen Targets
0.01Suggestive
Lyme diseaseOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
pachyonychia congenitaOpen Targets
0.00Suggestive
parasitic infectionOpen Targets
0.00Suggestive
atopic eczemaOpen Targets
0.00Suggestive
genetic disorderOpen Targets
0.00Suggestive
metabolic diseaseOpen Targets
0.00Suggestive
colorectal adenocarcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MMP7Protein interaction100%TOB1Protein interaction100%CPEB3Protein interaction100%CNOT1Protein interaction100%RC3H1Protein interaction85%BTG3Protein interaction78%
Tissue Expression6 tissues
Heart
100%
Liver
70%
Bone Marrow
58%
Lung
50%
Brain
43%
Ovary
35%
Gene Interaction Network
Click a node to explore
CNOT11MMP7TOB1CPEB3CNOT1RC3H1BTG3
PROTEIN STRUCTURE
Preparing viewer…
PDB8BFH · 2.20 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.58Moderately Constrained
pLIⓘ
0.77Intermediate
Observed/Expected LoF0.36 [0.23–0.58]
RankingsWhere CNOT11 stands among ~20K protein-coding genes
  • #7,643of 20,598
    Most Researched60
  • #3,912of 17,882
    Most Constrained (LOEUF)0.58 · top quartile
Genes detectedCNOT11
Sources retrieved5 papers
Response time—
📄 Sources
5
1
Mechanism of ribosome-associated mRNA degradation during tubulin autoregulation.
PMID: 37295431
Mol Cell · 2023
1.00
2
The human CNOT1-CNOT10-CNOT11 complex forms a structural platform for protein-protein interactions.
PMID: 36586408
Cell Rep · 2023
0.80
3
GGNBP2 regulates MDA5 sensing triggered by self double-stranded RNA following loss of ADAR1 editing.
PMID: 39576872
Sci Immunol · 2024
0.60
4
Structure and assembly of the NOT10:11 module of the CCR4-NOT complex.
PMID: 37460791
Commun Biol · 2023
0.40
5
C2ORF29/CNOT11 and CNOT10 form a new module of the CCR4-NOT complex.
PMID: 23232451
RNA Biol · 2013
0.20