HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CNTNAP1
contactin associated protein 1
Chromosome 17 Β· 17q21.2
NCBI Gene: 8506Ensembl: ENSG00000108797.12HGNC: HGNC:8011UniProt: P78357
51PubMed Papers
22Diseases
0Drugs
45Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingcentral nervous system myelinationmyelination in peripheral nervous systemparanodal junction assemblyHypomyelination neuropathy - arthrogryposisneuropathyarthrogryposis multiplex congenitafetal akinesia deformation sequence
✦AI Summary

CNTNAP1 encodes contactin-associated protein 1 (Caspr1), a transmembrane protein essential for myelinated axon organization and function. The protein localizes to paranodal regions flanking nodes of Ranvier in both peripheral and central nervous systems, where it forms a complex with contactin-1 and neurofascin-155 to establish proper axonal domain organization 1. CNTNAP1 is critical for maintaining paranodal junctions and enabling saltatory conduction of action potentials along myelinated nerve fibers 2. Pathogenic variants in CNTNAP1 cause severe congenital hypomyelinating neuropathy characterized by hypotonia, respiratory distress, joint contractures, and high infant mortality 3. Disease-associated mutations lead to protein instability, reduced surface expression, retention in neuronal soma, and disrupted paranodal ultrastructure with everted myelin loops 2. The condition affects both peripheral and central nervous systems, with surviving patients often requiring mechanical ventilation and experiencing seizures 3. Currently, 54 individuals with biallelic CNTNAP1 variants have been reported, demonstrating phenotypic diversity but consistent key features including intellectual disabilities and reduced life expectancy 4. Experimental gene therapy approaches in mouse models show promise for treatment by restoring proper axonal domain organization 2.

Sources cited
1
CNTNAP1 localizes to paranodal regions and is essential for axonal domain organization
PMID: 40265789
2
CNTNAP1 mutations cause protein instability and disrupted paranodal ultrastructure
PMID: 37862170
3
CNTNAP1 variants cause severe congenital hypomyelinating neuropathy with high mortality
PMID: 30686628
4
54 individuals with biallelic CNTNAP1 variants have been reported with consistent clinical features
PMID: 41656591
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜22
Hypomyelination neuropathy - arthrogryposisOpen Targets
0.83Strong
neuropathyOpen Targets
0.79Strong
arthrogryposis multiplex congenitaOpen Targets
0.41Moderate
fetal akinesia deformation sequenceOpen Targets
0.41Moderate
fetal akinesia deformation sequence 1Open Targets
0.41Moderate
hypomyelination neuropathy-arthrogryposis syndromeOpen Targets
0.37Weak
lethal congenital contracture syndromeOpen Targets
0.37Weak
genetic disorderOpen Targets
0.34Weak
digitotalar dysmorphismOpen Targets
0.34Weak
Charcot-Marie-Tooth disease type 4EOpen Targets
0.13Weak
X-linked spastic paraplegia type 34Open Targets
0.10Suggestive
spinocerebellar ataxia type 23Open Targets
0.09Suggestive
Spinocerebellar ataxia type 40Open Targets
0.09Suggestive
Early-onset X-linked optic atrophyOpen Targets
0.09Suggestive
Dysequilibrium syndromeOpen Targets
0.09Suggestive
Rare hereditary ataxiaOpen Targets
0.09Suggestive
optic atrophy 2Open Targets
0.09Suggestive
spastic paraplegia 72b, autosomal recessiveOpen Targets
0.09Suggestive
spinocerebellar ataxia type 15/16Open Targets
0.09Suggestive
autosomal dominant sensory ataxia 1Open Targets
0.09Suggestive
Lethal congenital contracture syndrome 7UniProt
Neuropathy, congenital hypomyelinating, 3UniProt
Pathogenic Variants45
NM_003632.3(CNTNAP1):c.2015G>A (p.Trp672Ter)Pathogenic
Arthrogryposis, distal, type 1A|Neuropathy, congenital hypomyelinating, 3|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 672
NM_003632.3(CNTNAP1):c.3361C>T (p.Arg1121Ter)Pathogenic
not provided|Neuropathy, congenital hypomyelinating, 3
β˜…β˜…β˜†β˜†2024β†’ Residue 1121
NM_003632.3(CNTNAP1):c.2901_2902del (p.Cys968fs)Pathogenic
Lethal congenital contracture syndrome 7|not provided|Neuropathy, congenital hypomyelinating, 3
β˜…β˜…β˜†β˜†2024β†’ Residue 968
NM_003632.3(CNTNAP1):c.2668C>T (p.Arg890Ter)Pathogenic
Lethal congenital contracture syndrome 7|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 890
NM_003632.3(CNTNAP1):c.1561dup (p.Leu521fs)Pathogenic
Lethal congenital contracture syndrome 7|not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 521
NM_003632.3(CNTNAP1):c.180del (p.Trp61fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2026β†’ Residue 61
NM_003632.3(CNTNAP1):c.1861C>T (p.Arg621Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 621
NM_003632.3(CNTNAP1):c.3475-2A>CPathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_003632.3(CNTNAP1):c.1312C>T (p.Arg438Ter)Pathogenic
Neuropathy, congenital hypomyelinating, 3
β˜…β˜†β˜†β˜†2025β†’ Residue 438
NM_003632.3(CNTNAP1):c.2060-1G>ALikely pathogenic
CNTNAP1-related disorder
β˜…β˜†β˜†β˜†2024
NM_003632.3(CNTNAP1):c.1852C>T (p.Arg618Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 618
NM_003632.3(CNTNAP1):c.967T>C (p.Cys323Arg)Likely pathogenic
Neuropathy, congenital hypomyelinating, 3
β˜…β˜†β˜†β˜†2024β†’ Residue 323
NM_003632.3(CNTNAP1):c.530del (p.Phe177fs)Pathogenic
Neuropathy, congenital hypomyelinating, 3
β˜…β˜†β˜†β˜†2024β†’ Residue 177
NM_003632.3(CNTNAP1):c.3814+1G>CLikely pathogenic
Neuropathy, congenital hypomyelinating, 3;Lethal congenital contracture syndrome 7
β˜…β˜†β˜†β˜†2024
NM_003632.3(CNTNAP1):c.808C>T (p.Arg270Ter)Pathogenic
CNTNAP1-related disorder
β˜…β˜†β˜†β˜†2024β†’ Residue 270
NM_003632.3(CNTNAP1):c.1446T>G (p.Tyr482Ter)Likely pathogenic
Neuropathy, congenital hypomyelinating, 3
β˜…β˜†β˜†β˜†2023β†’ Residue 482
NM_003632.3(CNTNAP1):c.1735+1G>APathogenic
not provided
β˜…β˜†β˜†β˜†2022
NM_003632.3(CNTNAP1):c.730C>T (p.Gln244Ter)Likely pathogenic
Lethal congenital contracture syndrome 7;Neuropathy, congenital hypomyelinating, 3
β˜…β˜†β˜†β˜†2022β†’ Residue 244
NM_003632.3(CNTNAP1):c.3767_3768del (p.Leu1256fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 1256
NM_003632.3(CNTNAP1):c.3394C>T (p.Gln1132Ter)Likely pathogenic
Congenital hypomyelination neuropathy with or without arthrogryposis
β˜…β˜†β˜†β˜†2022β†’ Residue 1132
View on ClinVar β†—
Related Genes
NFASCProtein interaction100%CNTN2Protein interaction94%KCNA2Protein interaction90%PTPRZ1Protein interaction86%EPB41Protein interaction86%EPB41L5Protein interaction86%
Tissue Expression6 tissues
Brain
100%
Ovary
78%
Lung
25%
Heart
24%
Bone Marrow
16%
Liver
8%
Gene Interaction Network
Click a node to explore
CNTNAP1NFASCCNTN2KCNA2PTPRZ1EPB41EPB41L5
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P78357
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.58Moderately Constrained
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.48 [0.40–0.58]
RankingsWhere CNTNAP1 stands among ~20K protein-coding genes
  • #8,658of 20,598
    Most Researched51
  • #1,430of 5,498
    Most Pathogenic Variants45
  • #3,846of 17,882
    Most Constrained (LOEUF)0.58 Β· top quartile
Genes detectedCNTNAP1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Phenotypic spectrum and genomics of undiagnosed arthrogryposis multiplex congenita.
PMID: 33820833
J Med Genet Β· 2022
1.00
2
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
0.90
3
Mouse models of human CNTNAP1-associated congenital hypomyelinating neuropathy and genetic restoration of murine neurological deficits.
PMID: 37862170
Cell Rep Β· 2023
0.80
4
M2-polarization-related CNTNAP1 gene might be a novel immunotherapeutic target and biomarker for clear cell renal cell carcinoma.
PMID: 35023290
IUBMB Life Β· 2022
0.70
5
A Novel Mutation in CNTNAP1 Gene Causes Disorganization of Axonal Domains, Hypomyelination and Severe Neurological Deficits.
PMID: 40265789
J Neurosci Res Β· 2025
0.60