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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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KCNA2
potassium voltage-gated channel subfamily A member 2
Chromosome 1 Β· 1p13.3
NCBI Gene: 3737Ensembl: ENSG00000177301.17HGNC: HGNC:6220UniProt: P16389
90PubMed Papers
22Diseases
7Drugs
63Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelTransporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
plasma membraneprotein bindingvoltage-gated potassium channel complexvoltage-gated potassium channel activitygenetic developmental and epileptic encephalopathyundetermined early-onset epileptic encephalopathymultiple sclerosisMyasthenia gravis
✦AI Summary

KCNA2 encodes Kv1.2, a voltage-gated potassium channel highly expressed in the central nervous system that plays critical roles in neuronal excitability and synaptic function 1. The channel forms tetrameric complexes that regulate potassium ion transport across neuronal membranes, preventing aberrant action potential firing and maintaining proper neuronal output 2. KCNA2 mutations cause developmental and epileptic encephalopathy (DEE), with distinct genotype-phenotype correlations based on functional effects 1. Loss-of-function mutations typically present with focal seizures, Rolandic epileptic discharges that may progress to electrical status epilepticus during sleep (ESES), and developmental regression after seizure onset 3. Gain-of-function mutations are associated with more severe phenotypes including neonatal-onset seizures, generalized epileptic activity, severe developmental delay, and brain atrophy 1. Mixed gain-and-loss-of-function variants cause the most severe early-onset phenotypes with both generalized and focal seizures 1. Beyond epilepsy, KCNA2 variants are associated with intellectual disability, autism spectrum disorder, and movement disorders 2. Additionally, KCNA2 autoantibodies have been identified in neuropsychiatric conditions, with some patients responding to immunotherapy 4. Recent research also suggests KCNA2's involvement in cancer cell proliferation through Hippo/YAP signaling pathways 5.

Sources cited
1
KCNA2 mutations cause epileptic encephalopathy with distinct genotype-phenotype correlations based on loss-of-function vs gain-of-function effects
PMID: 29050392
2
KCNA2 encodes Kv1.2 channel that regulates neuronal excitability and is associated with multiple neurological disorders
PMID: 38517617
3
Loss-of-function mutations cause focal seizures with Rolandic discharges progressing to ESES pattern
PMID: 31905474
4
KCNA2 autoantibodies are found in neuropsychiatric disorders with some patients responding to immunotherapy
PMID: 38309639
5
KCNA2 is involved in cancer cell proliferation through Hippo/YAP signaling pathways
PMID: 39695664
Disease Associationsβ“˜22
genetic developmental and epileptic encephalopathyOpen Targets
0.75Strong
undetermined early-onset epileptic encephalopathyOpen Targets
0.75Strong
multiple sclerosisOpen Targets
0.59Moderate
Myasthenia gravisOpen Targets
0.56Moderate
Lambert-Eaton myasthenic syndromeOpen Targets
0.55Moderate
genetic disorderOpen Targets
0.52Moderate
SeizureOpen Targets
0.52Moderate
Epileptic encephalopathyOpen Targets
0.46Moderate
Muscle weaknessOpen Targets
0.46Moderate
Nizon-Isidor syndromeOpen Targets
0.46Moderate
congenital myasthenic syndromeOpen Targets
0.43Moderate
Congenital myasthenic syndromesOpen Targets
0.43Moderate
Neurodevelopmental disorderOpen Targets
0.41Moderate
neoplasmOpen Targets
0.40Weak
cancerOpen Targets
0.38Weak
nervous system diseaseOpen Targets
0.37Weak
developmental and epileptic encephalopathyOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.37Weak
autoimmune diseaseOpen Targets
0.37Weak
small cell carcinomaOpen Targets
0.37Weak
Developmental and epileptic encephalopathy 32UniProt
Nizon-Isidor syndromeUniProt
Pathogenic Variants63
NM_004974.4(KCNA2):c.1130A>G (p.Tyr377Cys)Pathogenic
Developmental and epileptic encephalopathy, 32|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026β†’ Residue 377
NM_004974.4(KCNA2):c.1195G>A (p.Val399Met)Pathogenic
not provided|Developmental and epileptic encephalopathy, 32|KCN2A-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 399
NM_004974.4(KCNA2):c.890G>A (p.Arg297Gln)Pathogenic
Developmental and epileptic encephalopathy, 32|not provided|Inborn genetic diseases|Developmental and epileptic encephalopathy, 1|Neurodevelopmental disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 297
NM_004974.4(KCNA2):c.881G>A (p.Arg294His)Pathogenic
not provided|Inborn genetic diseases|Developmental and epileptic encephalopathy, 32|Complex neurodevelopmental disorder|KCNA2-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 294
NM_004974.4(KCNA2):c.1220C>T (p.Pro407Leu)Pathogenic
Developmental and epileptic encephalopathy, 32
β˜…β˜…β˜†β˜†2025β†’ Residue 407
NM_004974.4(KCNA2):c.785C>T (p.Ala262Val)Pathogenic
Developmental and epileptic encephalopathy, 32|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 262
NM_004974.4(KCNA2):c.1265_1266del (p.Glu422fs)Pathogenic
not provided|Developmental and epileptic encephalopathy, 32|Seizure
β˜…β˜…β˜†β˜†2025β†’ Residue 422
NM_004974.4(KCNA2):c.1118C>T (p.Thr373Ile)Pathogenic
not provided|Developmental and epileptic encephalopathy, 32
β˜…β˜…β˜†β˜†2025β†’ Residue 373
NM_004974.4(KCNA2):c.1214C>T (p.Pro405Leu)Pathogenic
Developmental and epileptic encephalopathy, 32|Inborn genetic diseases|not provided|Seizure
β˜…β˜…β˜†β˜†2024β†’ Residue 405
NM_004974.4(KCNA2):c.1013G>A (p.Gly338Glu)Pathogenic
Developmental and epileptic encephalopathy, 32|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 338
NM_004974.4(KCNA2):c.1216G>T (p.Val406Phe)Pathogenic
Developmental and epileptic encephalopathy, 32
β˜…β˜…β˜†β˜†2024β†’ Residue 406
NM_004974.4(KCNA2):c.889C>T (p.Arg297Trp)Pathogenic
not provided|Developmental and epileptic encephalopathy, 32
β˜…β˜…β˜†β˜†2024β†’ Residue 297
NM_004974.4(KCNA2):c.1120A>G (p.Thr374Ala)Pathogenic
Developmental and epileptic encephalopathy, 32
β˜…β˜…β˜†β˜†2024β†’ Residue 374
NM_004974.4(KCNA2):c.765_773del (p.Met255_Ile257del)Pathogenic
Developmental and epileptic encephalopathy, 32
β˜…β˜…β˜†β˜†2023β†’ Residue 255
NM_004974.4(KCNA2):c.298C>T (p.Arg100Ter)Pathogenic
Developmental and epileptic encephalopathy, 32
β˜…β˜…β˜†β˜†2022β†’ Residue 100
NM_004974.4(KCNA2):c.1219C>G (p.Pro407Ala)Pathogenic
not provided|Developmental and epileptic encephalopathy, 32
β˜…β˜…β˜†β˜†2022β†’ Residue 407
NM_004974.4(KCNA2):c.1175C>T (p.Ser392Phe)Pathogenic
Developmental and epileptic encephalopathy, 32
β˜…β˜†β˜†β˜†2025β†’ Residue 392
NM_004974.4(KCNA2):c.1193G>A (p.Gly398Asp)Pathogenic
Developmental and epileptic encephalopathy, 32
β˜…β˜†β˜†β˜†2025β†’ Residue 398
NM_004974.4(KCNA2):c.640C>T (p.Gln214Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 214
NM_004974.4(KCNA2):c.428dup (p.Asn143fs)Likely pathogenic
Seizure
β˜…β˜†β˜†β˜†2025β†’ Residue 143
View on ClinVar β†—
Drug Targets7
AMIFAMPRIDINEApproved
Voltage-gated potassium channel blocker
Myasthenia gravis
AMIFAMPRIDINE PHOSPHATEApproved
Voltage-gated potassium channel blocker
Lambert-Eaton myasthenic syndrome
DALFAMPRIDINEApproved
Voltage-gated potassium channel blocker
multiple sclerosis
GUANIDINEPhase III
Voltage-gated potassium channel blocker
neuroendocrine neoplasm
GUANIDINE HYDROCHLORIDEApproved
Voltage-gated potassium channel blocker
Myasthenia gravis
NERISPIRDINEPhase II
Voltage-gated potassium channel blocker
multiple sclerosis
TEDISAMILApproved
Voltage-gated potassium channel blocker
cardiac arrhythmia
Related Genes
CNTNAP2Protein interaction100%RPS5Protein interaction100%KCNAB1Protein interaction99%CTTNProtein interaction98%KCNA5Protein interaction98%KCNN4Protein interaction98%
Tissue Expression6 tissues
Brain
100%
Heart
17%
Bone Marrow
6%
Lung
1%
Ovary
1%
Liver
0%
Gene Interaction Network
Click a node to explore
KCNA2CNTNAP2RPS5KCNAB1CTTNKCNA5KCNN4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P16389
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.54Moderately Constrained
pLIβ“˜
0.94Intolerant
Observed/Expected LoF0.32 [0.20–0.54]
RankingsWhere KCNA2 stands among ~20K protein-coding genes
  • #5,311of 20,598
    Most Researched90
  • #305of 1,025
    FDA-Approved Drug Targets5
  • #1,126of 5,498
    Most Pathogenic Variants63 Β· top quartile
  • #3,381of 17,882
    Most Constrained (LOEUF)0.54 Β· top quartile
Genes detectedKCNA2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Potassium channels and epilepsy.
PMID: 36225112
Acta Neurol Scand Β· 2022
1.00
2
Episodic Ataxias: Primary and Secondary Etiologies, Treatment, and Classification Approaches.
PMID: 37008993
Tremor Other Hyperkinet Mov (N Y) Β· 2023
0.90
3
Clinical spectrum and genotype-phenotype associations of KCNA2-related encephalopathies.
PMID: 29050392
Brain Β· 2017
0.80
4
Roles of KCNA2 in Neurological Diseases: from Physiology to Pathology.
PMID: 38517617
Mol Neurobiol Β· 2024
0.70
5
Genetic determinants of global developmental delay and intellectual disability in Ukrainian children.
PMID: 38539105
J Neurodev Disord Β· 2024
0.60