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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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COLGALT1
collagen beta(1-O)galactosyltransferase 1
Chromosome 19 · 19p13.11
NCBI Gene: 79709Ensembl: ENSG00000130309.13HGNC: HGNC:26182UniProt: Q8NBJ5
90PubMed Papers
21Diseases
0Drugs
7Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of collagen fibril organizationendoplasmic reticulum lumenmembraneprotein O-linked glycosylation via galactosecerebral small vessel diseasegenetic disorderfamilial porencephalyresponse to COVID-19 vaccine
✦AI Summary

COLGALT1 encodes collagen beta(1-O)galactosyltransferase 1, a key enzyme in collagen post-translational modification. The protein transfers beta-galactose residues to hydroxylysine residues in collagen chains within the endoplasmic reticulum 1, facilitating collagen triple helix formation 2 and type IV collagen biosynthesis 3. Structurally, COLGALT1 forms an elongated head-to-head homodimer with two domains (GT1 and GT2), with the catalytic site located in the GT2 domain featuring a distinctive Glu-Asp-Asp motif coordinating Mn2+ cofactors 4. The enzyme functions as part of the KOGG complex—a fiber-like oligomeric assembly with lysyl hydroxylase PLOD3—orchestrating sequential hydroxylation and dual glycosylation of procollagen 5. Clinically, biallelic COLGALT1 mutations cause cerebral small vessel disease and porencephaly through impaired type IV collagen secretion, mirroring COL4A1/COL4A2-related pathologies 13. Emerging evidence suggests COLGALT1 serves as a prognostic biomarker in glioblastoma and kidney renal clear cell carcinoma, where elevated expression correlates with poor prognosis and altered immune microenvironment composition 67.

Sources cited
1
COLGALT1 initiates collagen glycosylation in the ER and mutations cause cerebral small vessel abnormality and porencephaly
PMID: 30822656
2
COLGALT1 facilitates collagen triple helix formation through glycosylation
PMID: 27402836
3
Biallelic COLGALT1 variants cause cerebral small vessel disease through impaired type IV collagen post-translational modification
PMID: 30412317
4
COLGALT1 forms a homodimer with catalytic site in GT2 domain containing Glu-Asp-Asp motif coordinating Mn2+
PMID: 40240392
5
COLGALT1 assembles with PLOD3 in KOGG complex enabling coordinated hydroxylation and glycosylation of procollagen lysine residues
PMID: 40069201
6
COLGALT1 is a potential prognostic biomarker in glioblastoma associated with immune microenvironment composition
PMID: 40887297
7
COLGALT1 is overexpressed in kidney renal clear cell carcinoma and associated with poor prognosis and immune responses
PMID: 35842702
8
COLGALT1 glycosylates collagens with β-d-galactopyranose and disaccharides affecting collagen secretion and fibril alignment
PMID: 38611696
Disease Associationsⓘ21
cerebral small vessel diseaseOpen Targets
0.73Strong
genetic disorderOpen Targets
0.42Moderate
familial porencephalyOpen Targets
0.37Weak
response to COVID-19 vaccineOpen Targets
0.16Weak
dilated cardiomyopathyOpen Targets
0.12Weak
vascular dementiaOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.08Suggestive
Hepatic fibrosisOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
Genetic visceral malformation of the liver, biliary tract, pancreas or spleenOpen Targets
0.07Suggestive
Acropectorovertebral dysplasiaOpen Targets
0.04Suggestive
brachydactyly type COpen Targets
0.04Suggestive
ulnar hemimeliaOpen Targets
0.04Suggestive
Brachydactyly - elbow wrist dysplasiaOpen Targets
0.04Suggestive
brachydactyly-elbow wrist dysplasia syndromeOpen Targets
0.04Suggestive
multiple synostoses syndromeOpen Targets
0.04Suggestive
syndactyly type 5Open Targets
0.04Suggestive
radial hemimeliaOpen Targets
0.04Suggestive
mesoaxial synostotic syndactyly with phalangeal reductionOpen Targets
0.03Suggestive
Langer mesomelic dysplasiaOpen Targets
0.03Suggestive
Brain small vessel disease 3UniProt
Pathogenic Variants7
NM_024656.4(COLGALT1):c.553_556dup (p.Thr186fs)Pathogenic
not provided
★☆☆☆2023→ Residue 186
NM_024656.4(COLGALT1):c.25_37del (p.Arg9fs)Pathogenic
Inborn genetic diseases
★☆☆☆2021→ Residue 9
NM_024656.4(COLGALT1):c.460G>C (p.Ala154Pro)Pathogenic
Brain small vessel disease 3
☆☆☆☆2019→ Residue 154
NM_024656.4(COLGALT1):c.1129G>C (p.Gly377Arg)Pathogenic
Brain small vessel disease 3
☆☆☆☆2019→ Residue 377
NM_024656.4(COLGALT1):c.452T>G (p.Leu151Arg)Pathogenic
Brain small vessel disease 3
☆☆☆☆2019→ Residue 151
NM_024656.4(COLGALT1):c.1096del (p.Glu366fs)Pathogenic
Brain small vessel disease 3
☆☆☆☆2019→ Residue 366
NM_024656.4(COLGALT1):c.173T>C (p.Leu58Pro)Likely pathogenic
Brain small vessel disease 3
☆☆☆☆→ Residue 58
View on ClinVar ↗
Related Genes
DPTShared pathway100%FMODShared pathway100%P4HA1Shared pathway100%LOXL4Shared pathway100%COL5A1Protein interaction97%COL6A2Protein interaction97%
Tissue Expression6 tissues
Lung
100%
Ovary
54%
Bone Marrow
48%
Liver
44%
Heart
40%
Brain
16%
Gene Interaction Network
Click a node to explore
COLGALT1DPTFMODP4HA1LOXL4COL5A1COL6A2
PROTEIN STRUCTURE
Preparing viewer…
PDB9EVJ · 2.70 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.02LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.79 [0.62–1.02]
RankingsWhere COLGALT1 stands among ~20K protein-coding genes
  • #5,297of 20,598
    Most Researched90
  • #3,190of 5,498
    Most Pathogenic Variants7
  • #10,023of 17,882
    Most Constrained (LOEUF)1.02
Genes detectedCOLGALT1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Collagen glycosylation.
PMID: 30822656
Curr Opin Struct Biol · 2019
1.00
2
Identification of novel lipid droplet factors that regulate lipophagy and cholesterol efflux in macrophage foam cells.
PMID: 33590792
Autophagy · 2021
0.90
3
Molecular structure and enzymatic mechanism of the human collagen hydroxylysine galactosyltransferase GLT25D1/COLGALT1.
PMID: 40240392
Nat Commun · 2025
0.80
4
The structural basis for the human procollagen lysine hydroxylation and dual-glycosylation.
PMID: 40069201
Nat Commun · 2025
0.70
5
Potential Prognostic Markers for Glioblastoma Associated with the Glioma Immune Microenvironment.
PMID: 40887297
Biol Pharm Bull · 2025
0.60