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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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COX3
mitochondrially encoded cytochrome c oxidase III
Chromosome MT
NCBI Gene: 4514Ensembl: ENSG00000198938.2HGNC: HGNC:7422UniProt: P00414
54PubMed Papers
23Diseases
0Drugs
8Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Swiss-Prot Reviewed
mitochondrial diseaseleigh syndrome due to mitochondrial complex iv deficiencyLeber hereditary optic neuropathyIsolated cytochrome C oxidase deficiency
✦AI Summary

COX3 (mitochondrial cytochrome c oxidase subunit III) is a critical component of Complex IV, the terminal enzyme of the mitochondrial electron transport chain. COX3 functions as part of the binuclear copper and heme catalytic center that reduces molecular oxygen to water, coupling this reaction to proton pumping across the inner mitochondrial membrane to generate the electrochemical gradient necessary for ATP synthesis via oxidative phosphorylation. Mechanistically, COX3 works in concert with other cytochrome c oxidase subunits to transfer electrons from reduced cytochrome c through copper A centers and heme groups to the active catalytic site, where four electrons and four protons reduce Oβ‚‚ to two water molecules 1. The protein is polyproline-rich, and its efficient synthesis requires TACO1-mediated relief of ribosomal stalling at polyproline stretches during mitochondrial translation 1. COX3 dysfunction has significant clinical relevance. Mutations in COX3 are associated with Leber hereditary optic neuropathy, mitochondrial complex IV deficiency, and recurrent myoglobinuria. Recent findings indicate that non-synonymous COX3 variants in peripheral blood leukocytes are associated with increased idiopathic pulmonary fibrosis (IPF) risk and poor prognosis, with affected patients showing shorter survival times 2. Additionally, truncating COX3 mutations alter nuclear DNA methylation patterns in ways that predict mortality and cardiovascular disease risk 3, demonstrating broader epigenetic consequences of COX3 dysfunction beyond direct bioenergetic effects.

Sources cited
1
TACO1 is required for rapid synthesis of polyproline-rich COX3, and COX3 contains polyproline stretches susceptible to ribosomal stalling
PMID: 39036954
2
Non-synonymous COX3 variants in leukocytes are associated with IPF risk and prognosis, with variant carriers showing shorter survival
PMID: 39941146
3
Truncating MT-COX3 mutations alter nuclear DNA methylation patterns associated with all-cause mortality and cardiovascular disease risk
PMID: 41330919
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜23
mitochondrial diseaseOpen Targets
0.67Moderate
leigh syndrome due to mitochondrial complex iv deficiencyOpen Targets
0.65Moderate
Leber hereditary optic neuropathyOpen Targets
0.64Moderate
Isolated cytochrome C oxidase deficiencyOpen Targets
0.63Moderate
MELAS syndromeOpen Targets
0.57Moderate
MERRFOpen Targets
0.52Moderate
MERRF syndromeOpen Targets
0.52Moderate
Mitochondrial myopathyOpen Targets
0.49Moderate
inborn mitochondrial myopathyOpen Targets
0.49Moderate
mitochondrial non-syndromic sensorineural hearing lossOpen Targets
0.49Moderate
Leigh syndromeOpen Targets
0.46Moderate
mitochondrial complex IV deficiency, nuclear-typeOpen Targets
0.46Moderate
Tetralogy of FallotOpen Targets
0.45Moderate
Kearns-Sayre syndromeOpen Targets
0.45Moderate
Mitochondrial encephalopathyOpen Targets
0.44Moderate
progressive external ophthalmoplegiaOpen Targets
0.44Moderate
familial hypertrophic cardiomyopathyOpen Targets
0.42Moderate
Pearson syndromeOpen Targets
0.42Moderate
Abnormal aortic valve physiologyOpen Targets
0.40Weak
External ophthalmoplegiaOpen Targets
0.40Weak
Leber hereditary optic neuropathyUniProt
Mitochondrial complex IV deficiencyUniProt
Recurrent myoglobinuria mitochondrialUniProt
Pathogenic Variants8
NC_012920.1(MT-CO3):m.9537dupLikely pathogenic
Mitochondrial complex IV deficiency, nuclear type 1|Leigh syndrome|Mitochondrial disease|Primary Mitochondrial Disorders
β˜…β˜…β˜…β˜†2024
NC_012920.1(MT-CO3):m.9952G>ALikely pathogenic
Mitochondrial complex IV deficiency, nuclear type 1|Mitochondrial disease
β˜…β˜…β˜…β˜†2024
NC_012920.1(MT-CO3):m.9487_9501delLikely pathogenic
Mitochondrial complex IV deficiency, nuclear type 1|Mitochondrial complex IV deficiency with recurrent myoglobinuria|Mitochondrial disease
β˜…β˜…β˜…β˜†2024
NC_012920.1(MT-CO3):m.9429_9430insCCCPathogenic
Tetralogy of Fallot
β˜†β˜†β˜†β˜†
NC_012920.1(MT-CO3):m.9443_9444insTTTPathogenic
Tetralogy of Fallot
β˜†β˜†β˜†β˜†
NC_012920.1(MT-CO3):m.9273_9274insATCPathogenic
Tetralogy of Fallot
β˜†β˜†β˜†β˜†
NC_012920.1(MT-CO3):m.9311_9312insGCALikely pathogenic
Abnormal aortic valve physiology
β˜†β˜†β˜†β˜†
NC_012920.1(MT-CO3):m.9431_9432insAPathogenic
Abnormal aortic valve physiology
β˜†β˜†β˜†β˜†
View on ClinVar β†—
Related Genes
CYP4F2Protein interaction98%PTGER4Protein interaction98%PTGESProtein interaction97%CYP2J2Protein interaction97%PTGES3Protein interaction96%PTGES2Protein interaction96%
Tissue Expression6 tissues
Heart
100%
Liver
50%
Brain
30%
Bone Marrow
14%
Ovary
8%
Lung
8%
Gene Interaction Network
Click a node to explore
COX3CYP4F2PTGER4PTGESCYP2J2PTGES3PTGES2
PROTEIN STRUCTURE
Preparing viewer…
PDB5Z62 Β· 3.60 Γ… Β· EM
View on RCSB β†—
RankingsWhere COX3 stands among ~20K protein-coding genes
  • #8,300of 20,598
    Most Researched54
  • #3,085of 5,498
    Most Pathogenic Variants8
Genes detectedCOX3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Mechanism of action of paracetamol.
PMID: 15662292
Am J Ther Β· 2005
1.00
2
Mitochondrial
PMID: 39941146
Int J Mol Sci Β· 2025
0.90
3
COX-3: fact or fancy?
PMID: 15589421
Joint Bone Spine Β· 2004
0.80
4
The human mitochondrial translation factor TACO1 alleviates mitoribosome stalling at polyproline stretches.
PMID: 39036954
Nucleic Acids Res Β· 2024
0.70
5
Improved detection of malaria cases in island settings of Vanuatu and Kenya by PCR that targets the Plasmodium mitochondrial cytochrome c oxidase III (cox3) gene.
PMID: 25256904
Parasitol Int Β· 2015
0.60