HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CPA3
carboxypeptidase A3
Chromosome 3 · 3q24
NCBI Gene: 1359Ensembl: ENSG00000163751.5HGNC: HGNC:2298UniProt: P15088
31PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Protease
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
extracellular matrixextracellular regionproteolysismetallocarboxypeptidase activityasthmaCOVID-19melanomachronic obstructive pulmonary disease
✦AI Summary

CPA3 (carboxypeptidase A3) is a mast cell-specific metallocarboxypeptidase localized to secretory granules that functions in proteolysis and extracellular matrix remodeling 1. As a key mast cell marker, CPA3 expression identifies a distinct embryonic precursor population that gives rise to dermal mast cells during development, with Cpa3+ progenitors rather than granulocyte-monocyte progenitors serving as the primary source of tissue-resident mast cells 2. In disease contexts, CPA3 levels are significantly dysregulated across multiple conditions. In lung diseases, mast cell CPA3 expression is markedly upregulated in chr3 obstructive pulmonary disease and idiopathic pulmonary fibrosis, correlating with immune cell infiltration and declining lung function 1. CPA3+ mast cells accumulate in endometriotic lesions where they contribute to inflammation and fibrosis through protease release and cytokine production 3. In testicular pathology, elevated CPA3+ mast cells associate with non-obstructive azoospermia and profibrogenic tissue remodeling 4. Conversely, CPA3 expression is downregulated in lung adenocarcinoma and mesothelioma, where lower CPA3 levels associate with better prognosis and lower cancer risk 56. These findings establish CPA3 as both a developmental marker and a disease-relevant mediator of immune-driven pathology.

Sources cited
1
Cpa3-expressing precursors give rise to embryonic-derived dermal mast cells, and Cpa3+ cells rather than GMPs serve as mast cell progenitors
PMID: 40419842
2
CPA3 is a mast cell-specific metalloprotease with upregulated expression in COPD and IPF lungs correlating with lung function decline and immune cell infiltration
PMID: 35983043
3
CPA3 is upregulated in endometriotic lesions where mast cells contribute to inflammation and fibrosis through protease release
PMID: 36016927
4
CPA3+ mast cells are elevated in non-obstructive azoospermia and associated with profibrogenic tissue remodeling
PMID: 38786055
5
CPA3 is decreased in lung adenocarcinoma tumors and identified as a prognostic gene with lower expression associating with better outcomes
PMID: 37583701
6
CPA3 is associated with lower risk of mesothelioma in integrated eQTL and Mendelian randomization analysis
PMID: 40223054
Disease Associationsⓘ20
asthmaOpen Targets
0.08Suggestive
COVID-19Open Targets
0.08Suggestive
melanomaOpen Targets
0.08Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.08Suggestive
idiopathic pulmonary fibrosisOpen Targets
0.05Suggestive
Abnormality of the integumentOpen Targets
0.05Suggestive
nonimmune chronic idiopathic neutropenia of adultsOpen Targets
0.05Suggestive
neutropenia, severe congenital, 2, autosomal dominantOpen Targets
0.05Suggestive
X-linked severe congenital neutropeniaOpen Targets
0.05Suggestive
myeloperoxidase deficiencyOpen Targets
0.05Suggestive
Neutropenia - monocytopenia - deafnessOpen Targets
0.05Suggestive
neutropenia-monocytopenia-deafness syndromeOpen Targets
0.05Suggestive
obesityOpen Targets
0.05Suggestive
chronic myelogenous leukemiaOpen Targets
0.04Suggestive
Blackfan-Diamond anemiaOpen Targets
0.04Suggestive
neoplasmOpen Targets
0.04Suggestive
Felty's syndromeOpen Targets
0.04Suggestive
chronic rhinosinusitis with nasal polypsOpen Targets
0.04Suggestive
combined immunodeficiency due to moesin deficiencyOpen Targets
0.04Suggestive
Recurrent infection due to specific granule deficiencyOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PREPShared pathway100%FCER1AProtein interaction100%CMA1Protein interaction97%CPA1Protein interaction92%CPA2Protein interaction92%NDST2Protein interaction90%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
95%
Heart
11%
Liver
6%
Ovary
1%
Brain
0%
Gene Interaction Network
Click a node to explore
CPA3PREPFCER1ACMA1CPA1CPA2NDST2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P15088
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.18LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.85 [0.62–1.18]
RankingsWhere CPA3 stands among ~20K protein-coding genes
  • #11,691of 20,598
    Most Researched31
  • #12,400of 17,882
    Most Constrained (LOEUF)1.18
Genes detectedCPA3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Identifying potential active ingredients from pomegranate in treating anemia: CPA3 and SOX4 are key proteins.
PMID: 39608521
Int J Biol Macromol · 2025
1.00
2
Identification of novel gene signature for lung adenocarcinoma by machine learning to predict immunotherapy and prognosis.
PMID: 37583701
Front Immunol · 2023
0.90
3
Integrative eQTL and Mendelian randomization analysis reveals key genetic markers in mesothelioma.
PMID: 40223054
Respir Res · 2025
0.80
4
Embryonic mast cells arise from the Cpa3-expressing precursors but not granulocyte-monocyte progenitors.
PMID: 40419842
Sci China Life Sci · 2025
0.70
5
Cyto- and Histopographic Assessment of CPA3-Positive Testicular Mast Cells in Obstructive and Non-Obstructive Azoospermia.
PMID: 38786055
Cells · 2024
0.60