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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CRX
cone-rod homeobox
Chromosome 19 Β· 19q13.33
NCBI Gene: 1406Ensembl: ENSG00000105392.17HGNC: HGNC:2383UniProt: O43186
94PubMed Papers
23Diseases
0Drugs
140Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
sequence-specific double-stranded DNA bindingRNA polymerase II cis-regulatory region sequence-specific DNA bindingprotein bindingDNA-binding transcription activator activity, RNA polymerase II-specificcone-rod dystrophy 2Leber congenital amaurosisLeber congenital amaurosis 7Cone rod dystrophy
✦AI Summary

CRX (cone-rod homeobox) is a transcription factor essential for photoreceptor development and maintenance. It binds to the DNA sequence 5'-TAATC[CA]-3' upstream of photoreceptor-specific genes, including opsin genes, and acts synergistically with transcription factors such as NRL, RORB, and RAX to regulate photoreceptor cell-specific gene transcription [UniProt]. Beyond its well-characterized transcriptional role, CRX regulates postmitotic photoreceptor precursor translocation during retinal differentiation in humans 1. Mutations in CRX cause autosomal dominant retinopathies spanning a disease spectrum including Leber congenital amaurosis 7, cone-rod dystrophy 2, and retinitis pigmentosa 2. CRX-associated diseases predominantly result from dominant-negative effects, where mutant CRX interferes with wild-type protein function, though haploinsufficiency also contributes to pathogenesis by compromising photoreceptor precursor differentiation and outer nuclear layer stratification 1. De novo CRX mutations account for approximately 10.34% of de novo mutations in inherited eye diseases 3, while pathogenic CRX variants appear in both East Asian-specific and European populations causing hereditary retinal dystrophies 4. Currently, no curative therapy exists; gene augmentation strategies are being investigated as potential treatments 2.

Sources cited
1
CRX haploinsufficiency compromises photoreceptor precursor translocation and outer nuclear layer differentiation; CRX regulates postmitotic photoreceptor precursor translocation
PMID: 38049871
2
CRX mutations cause autosomal dominant Leber congenital amaurosis, cone-rod dystrophy, and retinitis pigmentosa through dominant negative effects
PMID: 37440026
3
CRX has a diagnostic yield of de novo mutations of 10.34% in inherited eye diseases
PMID: 36729443
4
CRX mutations cause retinitis pigmentosa in Japanese populations with reported pathogenic variants
PMID: 31213501
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜23
cone-rod dystrophy 2Open Targets
0.74Strong
Leber congenital amaurosisOpen Targets
0.73Strong
Leber congenital amaurosis 7Open Targets
0.72Strong
Cone rod dystrophyOpen Targets
0.72Strong
retinitis pigmentosaOpen Targets
0.72Strong
Retinal dystrophyOpen Targets
0.57Moderate
cone-rod dystrophyOpen Targets
0.57Moderate
autosomal dominant retinitis pigmentosaOpen Targets
0.56Moderate
neurodegenerative diseaseOpen Targets
0.53Moderate
benign concentric annular macular dystrophyOpen Targets
0.46Moderate
Stargardt diseaseOpen Targets
0.45Moderate
Macular dystrophyOpen Targets
0.44Moderate
Leber congenital amaurosis 1Open Targets
0.43Moderate
Rod-cone dystrophyOpen Targets
0.39Weak
genetic disorderOpen Targets
0.38Weak
eye diseaseOpen Targets
0.37Weak
hereditary macular dystrophyOpen Targets
0.37Weak
refractive errorOpen Targets
0.33Weak
adolescent idiopathic scoliosisOpen Targets
0.28Weak
ArthropathyOpen Targets
0.24Weak
Cone-rod dystrophy 2UniProt
Leber congenital amaurosis 7UniProt
Retinitis pigmentosaUniProt
Pathogenic Variants140
NM_000554.6(CRX):c.590del (p.Pro197fs)Pathogenic
Leber congenital amaurosis 7;Cone-rod dystrophy 2|Stargardt disease|Retinal dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 197
NM_000554.6(CRX):c.127C>T (p.Arg43Cys)Pathogenic
Cone-rod dystrophy|Cone-rod dystrophy 2;Leber congenital amaurosis 7|Cone-rod dystrophy 2
β˜…β˜…β˜†β˜†2026β†’ Residue 43
NM_000554.6(CRX):c.268C>T (p.Arg90Trp)Pathogenic
Leber congenital amaurosis 7|not provided|Retinal dystrophy|Leber congenital amaurosis 7;Cone-rod dystrophy 2
β˜…β˜…β˜†β˜†2026β†’ Residue 90
NM_000554.6(CRX):c.128G>A (p.Arg43His)Pathogenic
Cone-rod dystrophy 2;Leber congenital amaurosis 7|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 43
NM_000554.6(CRX):c.500_501del (p.Ala166_Ser167insTer)Pathogenic
Leber congenital amaurosis 1|Leber congenital amaurosis 7;Cone-rod dystrophy 2|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026β†’ Residue 166
NM_000554.6(CRX):c.122G>A (p.Arg41Gln)Pathogenic
Cone-rod dystrophy 2|not provided|Cone-rod dystrophy 2;Leber congenital amaurosis 7|Retinal dystrophy|CRX-related disorder|Cone-rod dystrophy|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026β†’ Residue 41
NM_000554.6(CRX):c.449C>G (p.Ser150Ter)Pathogenic
Benign concentric annular macular dystrophy|Cone-rod dystrophy 2;Leber congenital amaurosis 7|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 150
NM_000554.6(CRX):c.615del (p.Ser206fs)Pathogenic
Cone-rod dystrophy 2|not provided|Leber congenital amaurosis 7;Cone-rod dystrophy 2|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 206
NM_000554.6(CRX):c.206G>A (p.Arg69His)Pathogenic
not provided|Cone-rod dystrophy 2;Leber congenital amaurosis 7|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 69
NM_000554.6(CRX):c.121C>T (p.Arg41Trp)Pathogenic
Cone-rod dystrophy 2|not provided|Retinal dystrophy|Cone-rod dystrophy 2;Leber congenital amaurosis 7|Cone-rod dystrophy|Retinitis pigmentosa
β˜…β˜…β˜†β˜†2025β†’ Residue 41
NM_000554.6(CRX):c.118C>T (p.Arg40Trp)Pathogenic
Retinal dystrophy|Cone-rod dystrophy 2;Leber congenital amaurosis 7|Cone-rod dystrophy 2|Retinitis pigmentosa|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 40
NM_000554.6(CRX):c.766C>T (p.Gln256Ter)Pathogenic
Leber congenital amaurosis 7;Cone-rod dystrophy 2|Cone-rod dystrophy 2
β˜…β˜…β˜†β˜†2025β†’ Residue 256
NM_000554.6(CRX):c.119G>A (p.Arg40Gln)Pathogenic
Retinal dystrophy|Cone-rod dystrophy 2;Leber congenital amaurosis 7|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 40
NM_000554.6(CRX):c.100+3_100+5delinsTTAPathogenic
not provided|Cone-rod dystrophy 2;Leber congenital amaurosis 7
β˜…β˜…β˜†β˜†2025
NM_000554.6(CRX):c.205C>T (p.Arg69Cys)Pathogenic
Retinitis pigmentosa|Retinal dystrophy|Leber congenital amaurosis 7;Cone-rod dystrophy 2|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 69
NM_000554.6(CRX):c.545C>G (p.Ser182Ter)Pathogenic
Cone-rod dystrophy 2|Cone-rod dystrophy 2;Leber congenital amaurosis 7
β˜…β˜…β˜†β˜†2025β†’ Residue 182
NM_000554.6(CRX):c.263A>G (p.Lys88Arg)Pathogenic
Leber congenital amaurosis 7;Cone-rod dystrophy 2|not provided|Retinitis pigmentosa|Cone-rod dystrophy 2
β˜…β˜…β˜†β˜†2025β†’ Residue 88
NM_000554.6(CRX):c.292C>T (p.Arg98Ter)Pathogenic
Retinitis pigmentosa|Leber congenital amaurosis 7;Cone-rod dystrophy 2|Cone-rod dystrophy 2
β˜…β˜…β˜†β˜†2025β†’ Residue 98
NM_000554.6(CRX):c.682C>T (p.Gln228Ter)Pathogenic
Leber congenital amaurosis 7;Cone-rod dystrophy 2|Retinitis pigmentosa
β˜…β˜…β˜†β˜†2025β†’ Residue 228
NM_000554.6(CRX):c.661del (p.Tyr221fs)Pathogenic
Benign concentric annular macular dystrophy|Cone-rod dystrophy 2;Leber congenital amaurosis 7
β˜…β˜…β˜†β˜†2025β†’ Residue 221
View on ClinVar β†—
Related Genes
NR2E3Protein interaction97%RHOProtein interaction94%ATXN7Protein interaction92%RCVRNProtein interaction91%NRLProtein interaction89%TPRX1Protein interaction89%
Tissue Expression6 tissues
Liver
100%
Brain
65%
Ovary
56%
Lung
46%
Bone Marrow
0%
Heart
0%
Gene Interaction Network
Click a node to explore
CRXNR2E3RHOATXN7RCVRNNRLTPRX1
PROTEIN STRUCTURE
Preparing viewer…
PDB9B8U Β· 2.90 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.67LoF Tolerant
pLIβ“˜
0.72Intermediate
Observed/Expected LoF0.32 [0.17–0.67]
RankingsWhere CRX stands among ~20K protein-coding genes
  • #5,075of 20,598
    Most Researched94 Β· top quartile
  • #544of 5,498
    Most Pathogenic Variants140 Β· top 10%
  • #4,972of 17,882
    Most Constrained (LOEUF)0.67
Genes detectedCRX
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetic characteristics of retinitis pigmentosa in 1204 Japanese patients.
PMID: 31213501
J Med Genet Β· 2019
1.00
2
De Novo Mutations Contributes Approximately 7% of Pathogenicity in Inherited Eye Diseases.
PMID: 36729443
Invest Ophthalmol Vis Sci Β· 2023
0.90
3
Clinical and genetic characteristics of 251 consecutive patients with macular and cone/cone-rod dystrophy.
PMID: 29555955
Sci Rep Β· 2018
0.80
4
The effects of high-intensity interval training, Nordic walking and moderate-to-vigorous intensity continuous training on functional capacity, depression and quality of life in patients with coronary artery disease enrolled in cardiac rehabilitation: A randomized controlled trial (CRX study).
PMID: 34245777
Prog Cardiovasc Dis Β· 2022
0.70
5
Immunogenicity of dupilumab in adult and pediatric patients with atopic dermatitis.
PMID: 39588375
Front Immunol Β· 2024
0.60