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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CST1
cystatin SN
Chromosome 20 · 20p11.21
NCBI Gene: 1469Ensembl: ENSG00000170373.9HGNC: HGNC:2473UniProt: P01037
66PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
GO:0005615protein bindingdetection of chemical stimulus involved in sensory perception of bitter tastecysteine-type endopeptidase inhibitor activityalcohol drinkingliver diseaseesophageal squamous cell carcinomacyst
✦AI Summary

CST1 (cystatin SN) is a cysteine protease inhibitor belonging to the type 2 cystatin family, primarily expressed in salivary glands, lacrimal glands, and respiratory epithelium 1. It functions as a suppressor of cysteine protease activity, particularly inhibiting allergen-derived proteases from house dust mites (HDM) 2. In allergic airway disease, CST1 protects epithelial barrier integrity by counteracting HDM-induced cysteine protease activity that disrupts tight junctions 2. CST1 expression is elevated in asthma and allergic rhinitis, where it serves as a biomarker of Th2-mediated inflammation and correlates with disease severity 23. Notably, CST1 is the only gene upregulated in both upper and lower airways in allergic disease patients and shows excellent diagnostic efficiency for distinguishing Th2-high asthma 3. Beyond allergic disease, CST1 plays a tumor-promoting role in esophageal squamous cell carcinoma, where it enhances cell migration and invasion through MEK/ERK/CREB pathway activation, and is regulated by miR-942-5p 45. These findings suggest CST1 has dual functionality: protective in allergic airway inflammation and pathogenic in cancer progression, making it a potential therapeutic target across distinct disease contexts.

Sources cited
1
CST1 inhibits HDM cysteine protease activity and protects epithelial barrier function; elevated in asthma sputum and serum, correlating with disease severity
PMID: 37026502
2
CST1 is the only gene upregulated in both upper and lower airways in AR and asthma patients; shows excellent ROC efficiency for Th2-high asthma diagnosis
PMID: 36733482
3
CST1 is highly expressed in ESCC and promotes cell migration/invasion via MEK/ERK/CREB pathway; regulated by miR-942-5p
PMID: 36848349
4
CST1+ myofibroblasts identified as tumor-specific subset in ESCC microenvironment with prognostic value
PMID: 34921160
5
CST1 is tissue-specifically expressed in salivary glands, lacrimal gland, gallbladder, and respiratory epithelium as a type 2 cystatin
PMID: 11879580
6
CST1 identified as hub gene in myoepithelial and mucus secretory cells module correlated with total IgE in asthmatic youth
PMID: 37742934
Disease Associationsⓘ20
alcohol drinkingOpen Targets
0.15Weak
liver diseaseOpen Targets
0.13Weak
esophageal squamous cell carcinomaOpen Targets
0.12Weak
cystOpen Targets
0.11Weak
gastric cancerOpen Targets
0.10Weak
asthmaOpen Targets
0.10Weak
breast cancerOpen Targets
0.10Suggestive
colorectal carcinomaOpen Targets
0.10Suggestive
non-small cell lung carcinomaOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.09Suggestive
lung adenocarcinomaOpen Targets
0.09Suggestive
allergic rhinitisOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
congenital rubellaOpen Targets
0.08Suggestive
Alzheimer diseaseOpen Targets
0.07Suggestive
papillary thyroid carcinomaOpen Targets
0.07Suggestive
atrial fibrillationOpen Targets
0.07Suggestive
cancerOpen Targets
0.05Suggestive
colorectal adenocarcinomaOpen Targets
0.05Suggestive
Uveal MelanomaOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CA6Shared pathway100%CPPED1Protein interaction94%CST2Protein interaction87%CST4Protein interaction77%PIPProtein interaction70%TAS2R42Shared pathway50%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
0%
Liver
0%
Brain
0%
Heart
0%
Lung
0%
Gene Interaction Network
Click a node to explore
CST1CA6CPPED1CST2CST4PIPTAS2R42
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P01037
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.96LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.79 [1.21–1.96]
RankingsWhere CST1 stands among ~20K protein-coding genes
  • #7,052of 20,598
    Most Researched66
  • #17,763of 17,882
    Most Constrained (LOEUF)1.96
Genes detectedCST1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Eosinophilic chronic rhinosinusitis.
PMID: 31402319
Allergol Int · 2019
1.00
2
Epithelium-derived cystatin SN inhibits house dust mite protease activity in allergic asthma.
PMID: 37026502
Allergy · 2023
0.90
3
Transcriptomic analysis of asthma and allergic rhinitis reveals CST1 as a biomarker of unified airways.
PMID: 36733482
Front Immunol · 2023
0.80
4
Integrated single-cell transcriptome analysis reveals heterogeneity of esophageal squamous cell carcinoma microenvironment.
PMID: 34921160
Nat Commun · 2021
0.70
5
Nasal epithelial gene expression and total IgE in children and adolescents with asthma.
PMID: 37742934
J Allergy Clin Immunol · 2024
0.60