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8 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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DDX31
DEAD-box helicase 31
Chromosome 9 · 9q34.13
NCBI Gene: 64794Ensembl: ENSG00000125485.18HGNC: HGNC:16715UniProt: A0AAK2PNZ4
71PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingribosome biogenesisnucleolusRNA bindingdermatitisEczematoid dermatitissialolithiasiscervical carcinoma
✦AI Summary

DDX31 is a DEAD-box RNA helicase localized to the nucleolus that plays critical roles in ribosome biogenesis and tumor suppression pathways. DDX31 possesses DNA and RNA-dependent ATPase activity 1 and functions primarily through its interaction with nucleophosmin (NPM1) in the nucleolus 2. In normal cellular context, DDX31-NPM1 complex promotes ribosomal RNA biogenesis; when DDX31 is attenuated, NPM1 translocates to the nucleoplasm and binds HDM2, reducing HDM2-p53 interactions and stabilizing p53, triggering G1 arrest and apoptosis 2. DDX31 is significantly upregulated in renal cell carcinoma (RCC) where it serves as an independent prognostic factor, and its overexpression promotes cell proliferation 2. In bladder cancer, cytoplasmic DDX31 cooperates with mutant p53 and EGFR to promote invasion and EGFR-Akt signaling 3. In head and neck cancer, DDX31 undergoes TRIM25-mediated K63-linked polyubiquitination and degradation; TBC1D14-induced DDX31 degradation suppresses ribosome biogenesis and lymph node metastasis 4. DDX31 also participates in germ cell development pathways and acts as a hub gene in infertility-associated networks 5. These findings establish DDX31 as a multifunctional regulator linking ribosome biogenesis, p53 signaling, and cancer progression.

Sources cited
1
DDX31 interacts with NPM1 in nucleoli, regulates ribosomal RNA biogenesis and p53-HDM2 pathway; DDX31 is overexpressed in RCC as independent prognostic factor
PMID: 23019224
2
DDX31 undergoes ubiquitin-mediated degradation via TRIM25-catalyzed K63-linked polyubiquitination; DDX31 degradation by TBC1D14 inhibits ribosome biogenesis and lymph node metastasis in HNSCC
PMID: 40784392
3
Cytoplasmic DDX31 binds mutant p53 and EGFR to promote muscle-invasive bladder cancer progression and EGFR-Akt signaling
PMID: 29440146
4
DDX31 is a hub gene in germ cell development pathways and infertility-associated protein-protein interaction networks
PMID: 36241908
5
DDX31 homologue PfDDX31 exhibits DNA and RNA-dependent ATPase activity and nucleolar localization
PMID: 31872112
6
DDX31 is an RNA binding protein with potential critical roles in medulloblastoma growth and maintenance
PMID: 24608801
7
DDX31 expression correlates with glioblastoma patient survival and participates in cancer-related pathways
PMID: 31233712
8
lnc-DDX31 is an immune-related long non-coding RNA with decreased expression in breast cancer
PMID: 34175685
Disease Associationsⓘ20
dermatitisOpen Targets
0.28Weak
Eczematoid dermatitisOpen Targets
0.28Weak
sialolithiasisOpen Targets
0.27Weak
cervical carcinomaOpen Targets
0.10Weak
coronary artery diseaseOpen Targets
0.07Suggestive
venous thromboembolismOpen Targets
0.07Suggestive
idiopathic pulmonary fibrosisOpen Targets
0.06Suggestive
neoplasmOpen Targets
0.05Suggestive
Ischemic strokeOpen Targets
0.05Suggestive
laryngeal carcinomaOpen Targets
0.03Suggestive
renal cell carcinomaOpen Targets
0.02Suggestive
medulloblastomaOpen Targets
0.01Suggestive
acute myeloid leukemiaOpen Targets
0.01Suggestive
pachyonychia congenitaOpen Targets
0.01Suggestive
infertilityOpen Targets
0.01Suggestive
urinary bladder carcinomaOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.00Suggestive
colorectal carcinomaOpen Targets
0.00Suggestive
azoospermiaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
RBISShared pathway100%NOP2Protein interaction99%BMS1Protein interaction99%DDX27Protein interaction99%CEBPZProtein interaction98%PDCD11Protein interaction98%
Tissue Expression6 tissues
Ovary
100%
Liver
90%
Lung
68%
Bone Marrow
65%
Heart
45%
Brain
40%
Gene Interaction Network
Click a node to explore
DDX31RBISNOP2BMS1DDX27CEBPZPDCD11
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9H8H2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.90LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.74 [0.60–0.90]
RankingsWhere DDX31 stands among ~20K protein-coding genes
  • #6,623of 20,598
    Most Researched71
  • #8,164of 17,882
    Most Constrained (LOEUF)0.90
Genes detectedDDX31
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
DDX31 regulates the p53-HDM2 pathway and rRNA gene transcription through its interaction with NPM1 in renal cell carcinomas.
PMID: 23019224
Cancer Res · 2012
1.00
2
VASA protein and gene expression analysis of human non-obstructive azoospermia and normal by immunohistochemistry, immunocytochemistry, and bioinformatics analysis.
PMID: 36241908
Sci Rep · 2022
0.88
3
TBC1D14 inhibits ribosome biogenesis to reduce lymph node metastasis in head and neck squamous cell carcinoma by mediating DDX31 ubiquitination.
PMID: 40784392
Int J Biol Macromol · 2025
0.75
4
A DDX31/Mutant-p53/EGFR Axis Promotes Multistep Progression of Muscle-Invasive Bladder Cancer.
PMID: 29440146
Cancer Res · 2018
0.63
5
RNA binding protein-mediated post-transcriptional gene regulation in medulloblastoma.
PMID: 24608801
Mol Cells · 2014
0.50