HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
DDX39B
DExD-box helicase 39B
Chromosome 6 · 6p21.33
NCBI Gene: 7919Ensembl: ENSG00000198563.15HGNC: HGNC:13917UniProt: A0A024RCM3
266PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTransporter
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytoplasmnucleusnuclear specktranscription export complex
✦AI Summary

DDX39B (DExD-box helicase 39B) is a DEAD-box RNA helicase with dual roles in RNA metabolism and cancer progression. As a core component of the TREX complex, DDX39B functions in mRNA splicing, export, and nuclear mRNP remodeling 12. The TREX-2 complex contains a conserved trigger loop that facilitates DDX39B release from mRNPs through interactions that split its RecA domains, enabling completion of mRNA export 2. Beyond canonical RNA processing, DDX39B promotes cancer metastasis across multiple tumor types through protein-protein interactions independent of its helicase activity. In colorectal cancer, DDX39B stabilizes PKM2 and recruits importin α5 for its nuclear translocation, activating glycolytic reprogramming 3. In non-small cell lung cancer, TRIM28-mediated K63-linked ubiquitination of DDX39B enhances its stability, promoting E-cadherin degradation and β-catenin signaling 4. DDX39B also regulates circRNA nuclear export through SUMOylation-dependent mechanisms affecting metastasis 5. In pancreatic cancer, DDX39B interacts with RETSAT to resolve R-loops and promote replication fork restart under hypoxic stress 6. Notably, biallelic DDX39B variants cause a novel neurodevelopmental syndrome featuring developmental delay, hypotonia, epilepsy, and microcephaly, with loss-of-function mechanisms demonstrated in model organisms 7. DDX39B represents an emerging therapeutic target for cancer and neurodevelopmental disorders.

Sources cited
1
DDX39B stabilizes PKM2 and recruits importin α5 for nuclear translocation, promoting glycolytic reprogramming and colorectal cancer metastasis
PMID: 35973989
2
TREX-2.1 complex with trigger loop facilitates DDX39B release from mRNPs during mRNA export
PMID: 40595470
3
De novo and inherited DDX39B variants cause neurodevelopmental syndrome with developmental delay, hypotonia, epilepsy, and microcephaly through loss-of-function mechanisms
PMID: 39918047
4
DDX39B is a DEAD-box RNA helicase important for genome stability and cancer development
PMID: 34680866
5
TRIM28-mediated K63-linked ubiquitination stabilizes DDX39B, promoting E-cadherin lysosomal degradation and NSCLC metastasis
PMID: 40664668
6
SUMOylation of DDX39B regulates circNCOR1 nuclear export, affecting bladder cancer lymph node metastasis via TGFβ-SMAD signaling
PMID: 35395674
7
DDX39B interacts with RETSAT to resolve R-loops and promote replication fork restart in pancreatic cancer under hypoxic stress
PMID: 36109793
8
TREX-2 complex with trigger loop modulates DDX39B activities and promotes its removal from mRNPs during nuclear export
PMID: 39862860
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SNRPGProtein interaction100%CDC40Protein interaction100%SNRPD1Protein interaction100%SNRPD2Protein interaction100%SNRPFProtein interaction100%SNRNP70Protein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
DDX39BSNRPGCDC40SNRPD1SNRPD2SNRPFSNRNP70
PROTEIN STRUCTURE
Preparing viewer…
PDB1T5I · 1.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.22Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.10 [0.05–0.22]
RankingsWhere DDX39B stands among ~20K protein-coding genes
  • #1,410of 20,598
    Most Researched266 · top 10%
  • #554of 17,882
    Most Constrained (LOEUF)0.22 · top 5%
Genes detectedDDX39B
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
DDX39B drives colorectal cancer progression by promoting the stability and nuclear translocation of PKM2.
PMID: 35973989
Signal Transduct Target Ther · 2022
1.00
2
Structural mechanism of DDX39B regulation by human TREX-2 and a related complex in mRNP remodeling.
PMID: 40595470
Nat Commun · 2025
0.90
3
De novo and inherited variants in DDX39B cause a novel neurodevelopmental syndrome.
PMID: 39918047
Brain · 2025
0.80
4
DDX39B (BAT1), TNF and IL6 gene polymorphisms and association with clinical outcomes of patients with Plasmodium vivax malaria.
PMID: 25038626
Malar J · 2014
0.72
5
DEAD-Box RNA Helicases and Genome Stability.
PMID: 34680866
Genes (Basel) · 2021
0.70