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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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DDX49
DEAD-box helicase 49
Chromosome 19 · 19p13.11
NCBI Gene: 54555Ensembl: ENSG00000105671.13HGNC: HGNC:18684UniProt: Q9Y6V7
64PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of cell growthRNA helicase activityregulation of rRNA stabilitynucleoplasmneurodegenerative diseaseposterior cortical atrophycolorectal carcinomahepatocellular carcinoma
✦AI Summary

DDX49 is an ATP-dependent RNA helicase with multifaceted roles in RNA metabolism and cellular homeostasis. Structurally, DDX49 possesses conserved helicase activity and a novel nuclease activity dependent on active site aspartate residues 1, required to maintain 5.8S rRNA levels and support cell proliferation through pre-ribosomal RNA regulation 21. Beyond canonical RNA processing, DDX49 exhibits antiviral activity by recognizing gammaherpesvirus transcripts during lytic reactivation, particularly KSHV immediate-early and early mRNAs, thereby suppressing viral replication and stimulating interferon responses 3. Recently, DDX49 was identified as a component of lipid-induced granules in hepatocytes, where it undergoes liquid-liquid phase separation triggered by arachidonic acid metabolites to restrain metabolic dysfunction-associated steatotic liver disease-related fibrosis through selective mRNA sequestration 4. Clinically, DDX49 overexpression correlates with poor prognosis across multiple malignancies including lung, breast, prostate, and hepatocellular carcinoma, where it promotes proliferation, migration, and metastasis via Akt/β-catenin and JAK-STAT signaling pathways 56789. These findings establish DDX49 as both a potential biomarker for lymph node metastasis and a therapeutic target in cancer treatment.

Sources cited
1
DDX49 regulates the stability and synthesis of pre-ribosomal RNA and thereby regulates cell proliferation
PMID: 29618122
2
DDX49 possesses antiviral activity by recognizing gammaherpesvirus transcripts in the context of lytic reactivation
PMID: 36298642
3
DDX49 has nuclease activity requiring active site aspartate residues and is required to sustain levels of 5.8S rRNA
PMID: 39698160
4
Lipids induce liquid-liquid phase separation of DDX49 forming lipid-induced granules that restrain liver fibrosis through mRNA sequestration
PMID: 41519131
5
DDX49 is associated with lymph node metastases in lung cancer via the Akt/β-catenin pathway; knockdown inhibits cell proliferation and migration
PMID: 31749282
6
DDX49 is an independent predictive factor for lymph node metastasis in lung cancer with high diagnostic specificity
PMID: 37096455
7
DDX49 overexpression in prostate cancer indicates poor prognosis; knockdown suppresses proliferation and promotes apoptosis
PMID: 37106339
8
DDX49 expression is elevated in breast cancer; shDDX49 suppresses proliferation, invasion, and migration by inhibiting the JAK-STAT pathway
PMID: 40178930
9
DDX49 is upregulated in hepatocellular carcinoma and contributes to tumor formation and metastasis
PMID: 33952717
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.17Weak
posterior cortical atrophyOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
lung cancerOpen Targets
0.05Suggestive
lymph node metastatic carcinomaOpen Targets
0.04Suggestive
lung adenocarcinomaOpen Targets
0.04Suggestive
cancerOpen Targets
0.03Suggestive
breast cancerOpen Targets
0.02Suggestive
prostate cancerOpen Targets
0.01Suggestive
cervical cancerOpen Targets
0.01Suggestive
thyroid cancerOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
cervical squamous cell carcinomaOpen Targets
0.01Suggestive
glioblastomaOpen Targets
0.01Suggestive
Kaposi's sarcomaOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
infectionOpen Targets
0.00Suggestive
non-small cell lung carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
UTP3Protein interaction100%MTREXProtein interaction100%FCF1Protein interaction100%NOL6Protein interaction99%UTP18Protein interaction99%RPS6Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
97%
Lung
66%
Heart
59%
Brain
58%
Ovary
57%
Gene Interaction Network
Click a node to explore
DDX49UTP3MTREXFCF1NOL6UTP18RPS6
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9Y6V7
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.19LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.94 [0.75–1.19]
RankingsWhere DDX49 stands among ~20K protein-coding genes
  • #7,258of 20,598
    Most Researched64
  • #12,535of 17,882
    Most Constrained (LOEUF)1.19
Genes detectedDDX49
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Lipid-induced granules in hepatocytes alleviate liver fibrosis.
PMID: 41519131
Cell Metab · 2026
1.00
2
DDX49 is a novel biomarker and therapeutic target for lung cancer metastases.
PMID: 31749282
J Cell Mol Med · 2020
0.90
3
Identification and validation of the model consisting of DDX49, EGFR, and T-stage as a possible risk factor for lymph node metastasis in patients with lung cancer.
PMID: 37096455
Thorac Cancer · 2023
0.80
4
Morphine may act via DDX49 to inhibit hepatocellular carcinoma cell growth.
PMID: 33952717
Aging (Albany NY) · 2021
0.70
5
Identification of a novel nuclease activity in human DDX49 helicase.
PMID: 39698160
R Soc Open Sci · 2024
0.60