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6 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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FCF1
FCF1 rRNA-processing protein
Chromosome 14 · 14q24.3
NCBI Gene: 51077Ensembl: ENSG00000119616.11HGNC: HGNC:20220UniProt: G3V1S4
38PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingprotein bindingsmall-subunit processomeribosomal small subunit biogenesisAlzheimer diseaseParkinson diseaselysosomal storage diseasemultiple sclerosis
✦AI Summary

FCF1 (FCF1 rRNA-processing protein) is a ribosomal biogenesis factor essential for small subunit (SSU) processome assembly and pre-rRNA processing. As a component of the SSU processome, FCF1 functions within the nucleolus to facilitate the maturation of small eukaryotic ribosomal subunit precursors through coordinated RNA folding, modifications, rearrangements, and targeted cleavage of pre-ribosomal RNA 1. The protein coordinates critical protein-protein interactions with other ribosome biogenesis factors, including proteins associated with snoRNPs and RNA helicases, playing a central role in remodeling pre-rRNA regions during 18S rRNA maturation 2. Knockdown studies demonstrate that FCF1 depletion produces characteristic changes in pre-rRNA processing patterns, particularly affecting endonucleolytic cleavages in the internal transcribed spacer 1 (ITS1) region 1. Beyond its canonical ribosomal function, FCF1 has emerged as a potential clinical biomarker; it is upregulated in clear cell renal cell carcinoma and included in prognostic RNA editing-based models that effectively distinguish high and low-risk patient populations 3. Additionally, FCF1 appears relevant to circulating tumor cell biology, where it is part of a CTC-specific molecular signature that improves cancer cell detection in breast cancer patients 4. These findings suggest FCF1 has both fundamental roles in ribosome assembly and emerging significance as a disease biomarker.

Sources cited
1
FCF1 is required for early maturation of the small ribosomal subunit and affects pre-rRNA cleavage patterns in the internal transcribed spacer 1 (ITS1)
PMID: 25190460
2
FCF1 (yUtp24/hUTP24) is essential for early pre-rRNA cleavages and coordinates key protein-protein interactions in the SSU processome
PMID: 28082392
3
FCF1 is upregulated in clear cell renal cell carcinoma and is part of an RNA editing-based prognostic model that serves as an independent prognostic factor
PMID: 39091293
4
FCF1 is part of a CTC-specific gene panel that improves circulating tumor cell detection in breast cancer patients compared to conventional markers
PMID: 35216615
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
Alzheimer diseaseOpen Targets
0.47Moderate
lysosomal storage diseaseOpen Targets
0.46Moderate
multiple sclerosisOpen Targets
0.46Moderate
neurodegenerative diseaseOpen Targets
0.46Moderate
Parkinson diseaseOpen Targets
0.46Moderate
hypertensionOpen Targets
0.10Weak
response to xenobiotic stimulusOpen Targets
0.10Weak
alcohol drinkingOpen Targets
0.06Suggestive
major depressive disorderOpen Targets
0.04Suggestive
irritable bowel syndromeOpen Targets
0.03Suggestive
neurotic disorderOpen Targets
0.03Suggestive
AnxietyOpen Targets
0.02Suggestive
dermatophytosisOpen Targets
0.02Suggestive
dermatomycosisOpen Targets
0.02Suggestive
HypocalcemiaOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
cerebral amyloid angiopathyOpen Targets
0.01Suggestive
diabetes mellitusOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FSAF1Shared pathway100%NOP58Protein interaction100%DDX47Protein interaction100%UTP23Protein interaction100%HEATR1Protein interaction100%UTP15Protein interaction100%
Tissue Expression6 tissues
Heart
100%
Brain
90%
Ovary
87%
Bone Marrow
80%
Liver
75%
Lung
69%
Gene Interaction Network
Click a node to explore
FCF1FSAF1NOP58DDX47UTP23HEATR1UTP15
PROTEIN STRUCTURE
Preparing viewer…
PDB7MQA · 2.70 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.02LoF Tolerant
pLIⓘ
0.02Tolerant
Observed/Expected LoF0.58 [0.35–1.02]
RankingsWhere FCF1 stands among ~20K protein-coding genes
  • #10,475of 20,598
    Most Researched38
  • #9,938of 17,882
    Most Constrained (LOEUF)1.02
Genes detectedFCF1
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
Identification of prognostic RNA editing profiles for clear cell renal carcinoma.
PMID: 39091293
Front Med (Lausanne) · 2024
1.00
2
The Neonatal Palliative Care Attitude Scale: Psychometric properties for Portuguese neonatal nurses.
PMID: 35818713
Palliat Support Care · 2024
0.83
3
Two orthogonal cleavages separate subunit RNAs in mouse ribosome biogenesis.
PMID: 25190460
Nucleic Acids Res · 2014
0.67
4
Gene signatures of circulating breast cancer cell models are a source of novel molecular determinants of metastasis and improve circulating tumor cell detection in patients.
PMID: 35216615
J Exp Clin Cancer Res · 2022
0.50
5
The ribosome biogenesis factor yUtp23/hUTP23 coordinates key interactions in the yeast and human pre-40S particle and hUTP23 contains an essential PIN domain.
PMID: 28082392
Nucleic Acids Res · 2017
0.33