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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NOP58
NOP58 ribonucleoprotein
Chromosome 2 · 2q33.1
NCBI Gene: 51602Ensembl: ENSG00000055044.12HGNC: HGNC:29926UniProt: Q9Y2X3
240PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
TFIID-class transcription factor complex bindingRNA bindingprotein bindingsnoRNA bindingdiverticular diseasepulmonary hypertension, primary, 1coronary artery diseaseHypercholesterolemia
✦AI Summary

NOP58 is a core component of box C/D small nucleolar ribonucleoproteins (snoRNPs) essential for ribosome biogenesis and RNA modification 1. As a key structural protein in the small subunit (SSU) processome, NOP58 guides the 2'-O-methylation of ribosomal RNAs (rRNAs) and messenger RNAs (mRNAs) at multiple sites, facilitating pre-rRNA processing and ribosomal protein assembly in the nucleolus 2. NOP58 is recruited to snoRNP complexes through interactions with long non-coding RNAs and the PAQosome chaperone complex, where cofactor NOPCHAP1 selectively loads NOP58 onto RUVBL1/2 AAA+ ATPases during box C/D snoRNP assembly 3. Clinically, NOP58 overexpression correlates with poor prognosis across multiple cancer types. In hepatocellular carcinoma, elevated NOP58 independently predicts worse overall survival and associates with advanced tumor stage and TP53 mutations 4. In glioblastoma and colorectal cancer, oncogenic lncRNAs promote NOP58-mediated rRNA methylation, enhancing translation of oncogenic proteins and driving tumor stemness and proliferation 56. Similarly, in Ewing sarcoma and lung adenocarcinoma, NOP58 knockdown inhibits cell proliferation, migration, and tumorigenesis in vivo 78. These findings identify NOP58 as a potential therapeutic target in cancer treatment.

Sources cited
1
NOP58 is a core component of box C/D small nucleolar ribonucleoproteins (snoRNPs) essential for ribosome biogenesis and RNA modification .
PMID: 10606270
2
As a key structural protein in the small subunit (SSU) processome, NOP58 guides the 2'-O-methylation of ribosomal RNAs (rRNAs) and messenger RNAs (mRNAs) at multiple sites, facilitating pre-rRNA processing and ribosomal protein assembly in the nucleolus .
PMID: 34516797
3
NOP58 is recruited to snoRNP complexes through interactions with long non-coding RNAs and the PAQosome chaperone complex, where cofactor NOPCHAP1 selectively loads NOP58 onto RUVBL1/2 AAA+ ATPases during box C/D snoRNP assembly .
PMID: 33367824
4
In hepatocellular carcinoma, elevated NOP58 independently predicts worse overall survival and associates with advanced tumor stage and TP53 mutations .
PMID: 34014550
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
diverticular diseaseOpen Targets
0.38Weak
pulmonary hypertension, primary, 1Open Targets
0.33Weak
coronary artery diseaseOpen Targets
0.33Weak
HypercholesterolemiaOpen Targets
0.32Weak
Hashimoto's thyroiditisOpen Targets
0.32Weak
goutOpen Targets
0.19Weak
metabolic diseaseOpen Targets
0.15Weak
type 2 diabetes mellitusOpen Targets
0.14Weak
hyperlipidemiaOpen Targets
0.12Weak
JaundiceOpen Targets
0.06Suggestive
osteitis deformansOpen Targets
0.05Suggestive
myocardial infarctionOpen Targets
0.04Suggestive
prostate cancerOpen Targets
0.04Suggestive
non-small cell lung carcinomaOpen Targets
0.03Suggestive
gliomaOpen Targets
0.03Suggestive
preeclampsiaOpen Targets
0.02Suggestive
squamous cell carcinomaOpen Targets
0.02Suggestive
colorectal carcinomaOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DKC1Protein interaction100%NCLProtein interaction100%NOP2Protein interaction100%RTCAProtein interaction100%DDX21Protein interaction100%NOLC1Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
47%
Liver
41%
Lung
35%
Heart
28%
Brain
21%
Gene Interaction Network
Click a node to explore
NOP58DKC1NCLNOP2RTCADDX21NOLC1
PROTEIN STRUCTURE
Preparing viewer…
PDB7MQA · 2.70 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.99LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.70 [0.50–0.99]
RankingsWhere NOP58 stands among ~20K protein-coding genes
  • #1,636of 20,598
    Most Researched240 · top 10%
  • #9,573of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedNOP58
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
LncRNA INHEG promotes glioma stem cell maintenance and tumorigenicity through regulating rRNA 2'-O-methylation.
PMID: 37980347
Nat Commun · 2023
1.00
2
Long noncoding RNA ZFAS1 promoting small nucleolar RNA-mediated 2'-O-methylation via NOP58 recruitment in colorectal cancer.
PMID: 32443980
Mol Cancer · 2020
0.90
3
RNA-binding protein gene NOP58 exhibits crucial prognostic and therapeutic value in Ewing sarcoma.
PMID: 40369667
Hereditas · 2025
0.80
4
Isolation and characterization of a novel PDGF-induced human gene.
PMID: 10925205
Gene · 2000
0.72
5
N6-methyladenosine-modified oncofetal lncRNA MIR4435-2HG contributed to stemness features of hepatocellular carcinoma cells by regulating rRNA 2'-O methylation.
PMID: 37891494
Cell Mol Biol Lett · 2023
0.70