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26 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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DDX21
DExD-box helicase 21
Chromosome 10 · 10q22.1
NCBI Gene: 9188Ensembl: ENSG00000165732.14HGNC: HGNC:2744UniProt: A0A8I5KYZ4
362PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
RESEARCH IMPACT
Highly StudiedTrending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
R-loop processingRNA bindingnucleolusosteoblast differentiationneurodegenerative diseasecolorectal carcinomaneoplasmcancer
✦AI Summary

DDX21 is a DEAD-box RNA helicase that serves as a multifunctional regulator of gene expression and genome stability. The protein primarily functions in ribosome biogenesis by binding various RNAs including rRNAs and snoRNAs, promoting rRNA transcription and processing in the nucleolus 1. DDX21 forms ring-shaped structures around RNA polymerase I complexes, with its activity modulated by the lncRNA SLERT, which loosens these rings to enhance pre-rRNA transcription 12. Beyond ribosomal function, DDX21 acts as a sensor of RNA polymerase II transcription by binding 7SK RNA and facilitating P-TEFb release to promote transcription. The helicase undergoes glucose-dependent conformational changes that dissociate DDX21 dimers, leading to nucleoplasmic relocalization where it regulates mRNA splicing of differentiation genes 3. DDX21 also maintains genome stability through multiple mechanisms: it resolves R-loops in collaboration with ADAR1 and other helicases during replication stress 4, mediates co-transcriptional m6A modification through METTL3 interaction 5, and undergoes phase separation to regulate cancer metastasis pathways 6. These diverse functions establish DDX21 as a critical coordinator of transcription, RNA processing, and genome integrity 78.

Sources cited
1
DDX21 forms ring-shaped structures around RNA polymerase I complexes and is regulated by SLERT lncRNA
PMID: 28475895
2
SLERT binding promotes DDX21 closed conformation and formation of loose clusters that coat dense fibrillar components
PMID: 34326237
3
Glucose binding causes DDX21 dimer dissociation and relocalization to nucleoplasm where it regulates mRNA splicing
PMID: 36608661
4
DDX21 collaborates with ADAR1 to resolve R-loops during replication stress response
PMID: 37831098
5
DDX21 mediates co-transcriptional m6A modification through interaction with METTL3
PMID: 38569554
6
DDX21 undergoes phase separation to regulate colorectal cancer metastasis via MCM5-dependent EMT pathway
PMID: 37029300
7
DDX21 is part of DEAD-box RNA helicase family important for genome stability
PMID: 34680866
8
DDX21 orchestrates gene expression and has roles in health and disease
PMID: 38762067
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.40Weak
colorectal carcinomaOpen Targets
0.11Weak
neoplasmOpen Targets
0.10Weak
cancerOpen Targets
0.10Suggestive
gastric cancerOpen Targets
0.10Suggestive
hepatocellular carcinomaOpen Targets
0.09Suggestive
colorectal cancerOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.08Suggestive
acute myeloid leukemiaOpen Targets
0.08Suggestive
neuroblastomaOpen Targets
0.07Suggestive
anaplastic large cell lymphomaOpen Targets
0.07Suggestive
viral diseaseOpen Targets
0.07Suggestive
malariaOpen Targets
0.06Suggestive
alloimmunizationOpen Targets
0.05Suggestive
infectionOpen Targets
0.03Suggestive
lung adenocarcinomaOpen Targets
0.03Suggestive
insomniaOpen Targets
0.03Suggestive
COVID-19Open Targets
0.03Suggestive
autismOpen Targets
0.02Suggestive
ovarian cancerOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DKC1Protein interaction100%NOP56Protein interaction100%NOP58Protein interaction100%DHX36Protein interaction100%WDR46Protein interaction100%RRP1BProtein interaction98%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
53%
Brain
43%
Ovary
30%
Heart
29%
Liver
28%
Gene Interaction Network
Click a node to explore
DDX21DKC1NOP56NOP58DHX36WDR46RRP1B
PROTEIN STRUCTURE
Preparing viewer…
PDB6L5O · 1.80 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.29Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.19 [0.13–0.29]
RankingsWhere DDX21 stands among ~20K protein-coding genes
  • #849of 20,598
    Most Researched362 · top 5%
  • #1,059of 17,882
    Most Constrained (LOEUF)0.29 · top 10%
Genes detectedDDX21
Sources retrieved26 papers
Response time—
📄 Sources
26▼
1
Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation.
PMID: 36608661
Cell · 2023
1.00
2
SLERT Regulates DDX21 Rings Associated with Pol I Transcription.
PMID: 28475895
Cell · 2017
0.90
3
Phase separation of DDX21 promotes colorectal cancer metastasis via MCM5-dependent EMT pathway.
PMID: 37029300
Oncogene · 2023
0.80
4
Role of DEAD/DEAH-box helicases in immunity, infection and cancers.
PMID: 40537811
Cell Commun Signal · 2025
0.72
5
DDX21 mediates co-transcriptional RNA m
PMID: 38569554
Mol Cell · 2024
0.70