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23 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RRP1B
ribosomal RNA processing 1B
Chromosome 21 · 21q22.3
NCBI Gene: 23076Ensembl: ENSG00000160208.13HGNC: HGNC:23818UniProt: Q14684
187PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
transcription coactivator activityRNA bindingprotein bindingpositive regulation of transcription by RNA polymerase IIhypertensionessential hypertensionresponse to xenobiotic stimuluscardiovascular disease
✦AI Summary

RRP1B (ribosomal RNA processing 1B) is a transcriptional coactivator located on chromosome 21 with primary roles in both viral response and cancer biology. Following influenza A virus infection, RRP1B promotes viral mRNA transcription by facilitating binding of IAV RNA-directed RNA polymerase to capped mRNA [UniProt]. Beyond viral functions, RRP1B regulates alternative splicing and gene expression through physical and functional interactions with splicing regulators like SRSF1, thereby modulating expression of over 600 genes involved in cell cycle regulation 1. RRP1B has emerged as a novel susceptibility gene for breast cancer progression and metastasis 2. Germline polymorphisms in RRP1B (particularly 1307T>C) are significantly associated with increased breast cancer risk, with the T allele conferring 1.75-fold elevated risk and correlating with advanced disease, positive lymph node status, and poor survival 34. RRP1B interacts functionally with metastasis modifier SIPA1 to suppress tumor growth and modulate extracellular matrix gene expression 2. Beyond breast cancer, RRP1B shows clinical relevance as a diagnostic biomarker. Its expression is significantly elevated in early gastric cancer tissues and plasma, correlating with distal metastasis and tumor-node-metastasis staging 5. RRP1B also functions as a sepsis biomarker with diagnostic AUC >0.95 and participates in lymphocyte activation and differentiation 6. Recent GWAS identified RRP1B variants associated with serum lipid levels through gene-by-psychosocial interactions, suggesting potential drug repurposing opportunities with Atenolol 7.

Sources cited
1
RRP1B identified as metastasis modifier in breast cancer through interaction with SIPA1; associated with ECM gene expression and poor prognosis
PMID: 18081427
2
RRP1B is differentially expressed in early gastric cancer and correlates with distal metastasis and TNM staging
PMID: 29039538
3
RRP1B variants associated with serum lipids through gene-by-psychosocial interactions; identified as Atenolol target for drug repurposing
PMID: 40537477
4
RRP1B polymorphisms associated with breast cancer lymph node status, survival, and tumor grade
PMID: 26901824
5
RRP1B 1307T>C polymorphism T allele confers 1.75-fold risk for breast cancer; associated with advanced disease, tumor size, and lymph node status
PMID: 25277657
6
RRP1B identified as hub gene in sepsis with diagnostic AUC >0.95; participates in lymphocyte activation and differentiation
PMID: 38063093
7
RRP1B regulates alternative mRNA isoform expression through interaction with SRSF1; knockdown affects over 600 genes involved in cell cycle regulation
PMID: 23604122
Disease Associationsⓘ20
hypertensionOpen Targets
0.32Weak
essential hypertensionOpen Targets
0.24Weak
response to xenobiotic stimulusOpen Targets
0.20Weak
cardiovascular diseaseOpen Targets
0.20Weak
coronary artery diseaseOpen Targets
0.18Weak
Increased blood pressureOpen Targets
0.15Weak
Abnormality of refractionOpen Targets
0.13Weak
breast cancerOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.06Suggestive
cervical cancerOpen Targets
0.04Suggestive
placenta praeviaOpen Targets
0.03Suggestive
KeloidOpen Targets
0.01Suggestive
oral squamous cell carcinomaOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
neuroblastomaOpen Targets
0.01Suggestive
breast carcinomaOpen Targets
0.00Suggestive
Miyoshi myopathyOpen Targets
0.00Suggestive
sclerodermaOpen Targets
0.00Suggestive
non-small cell lung carcinomaOpen Targets
0.00Suggestive
colorectal carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
RPLP0Protein interaction100%RPL32Protein interaction100%RPL14Protein interaction100%RPL4Protein interaction100%EIF6Protein interaction100%RPL23AProtein interaction100%
Tissue Expression6 tissues
Brain
100%
Ovary
97%
Liver
69%
Bone Marrow
61%
Lung
60%
Heart
48%
Gene Interaction Network
Click a node to explore
RRP1BRPLP0RPL32RPL14RPL4EIF6RPL23A
PROTEIN STRUCTURE
Preparing viewer…
PDB7T0Y · 1.80 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.96LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.76 [0.60–0.96]
RankingsWhere RRP1B stands among ~20K protein-coding genes
  • #2,297of 20,598
    Most Researched187 · top quartile
  • #9,093of 17,882
    Most Constrained (LOEUF)0.96
Genes detectedRRP1B
Sources retrieved23 papers
Response time—
📄 Sources
23▼
1
Rrp1b, a new candidate susceptibility gene for breast cancer progression and metastasis.
PMID: 18081427
PLoS Genet · 2007
1.00
2
Potential lncRNA diagnostic biomarkers for early gastric cancer.
PMID: 29039538
Mol Med Rep · 2017
0.90
3
Multi-ancestry genome-wide association analyses incorporating SNP-by-psychosocial interactions identify novel loci for serum lipids.
PMID: 40537477
Transl Psychiatry · 2025
0.80
4
Loss of Amphiregulin drives inflammation and endothelial apoptosis in pulmonary hypertension.
PMID: 35732465
Life Sci Alliance · 2022
0.78
5
The contribution of SIPA1 and RRP1B germline polymorphisms to breast cancer phenotype, lymph node status and survival in a group of Lithuanian young breast cancer patients.
PMID: 26901824
Biomarkers · 2016
0.70