HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
16 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
DDX47
DEAD-box helicase 47
Chromosome 12 · 12p13.1
NCBI Gene: 51202Ensembl: ENSG00000213782.8HGNC: HGNC:18682UniProt: Q9H0S4
154PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
extrinsic apoptotic signaling pathway via death domain receptorsRNA splicingRNA bindingnucleolusIntellectual disabilitylung adenocarcinomainfectionprostate adenocarcinoma
✦AI Summary

DDX47 is a DEAD-box RNA helicase with multifaceted roles in RNA metabolism and genome stability. Functionally, DDX47 is required for efficient ribosome biogenesis through its involvement in pre-rRNA processing 1, with proper nucleolar localization dependent on the nucleolar protein NOP132 1. Beyond ribosome assembly, DDX47 functions as an R-loop resolvase that protects cells from harmful R-loop accumulation, which can cause genome instability 2. The helicase works in concert with other factors like senataxin and DDX39B to resolve nucleolar R-loops 3, and interacts with FANCD2 to suppress R-loops during mild replication stress 4. DDX47 is involved in apoptotic pathways and RNA splicing processes 1. Clinically, DDX47 dysregulation is associated with multiple malignancies. High DDX47 expression in lung adenocarcinoma correlates with poor prognosis and promotes cell proliferation and migration 5. DDX47 was identified as a prognostic RNA binding protein in renal cell carcinoma 6 and shows diagnostic value in sepsis/septic shock, where it associates with immune cell regulation and apoptotic pathways 7. These findings suggest DDX47 dysfunction contributes to carcinogenesis and immune dysregulation through altered R-loop homeostasis and RNA metabolism.

Sources cited
1
DDX47 is an R-loop resolvase that protects cells from harmful R-loops and genome instability
PMID: 36827184
2
DDX47 is required for pre-rRNA processing and proper nucleolar localization depends on NOP132
PMID: 16963496
3
DDX47 resolves nucleolar R-loops and interacts with senataxin and DDX39B
PMID: 36914533
4
DDX47 interacts with FANCD2 to suppress R-loops during replication stress
PMID: 30431240
5
High DDX47 expression in lung adenocarcinoma predicts poor prognosis and promotes cell proliferation and migration
PMID: 35490652
6
DDX47 is a prognostic RNA binding protein in renal cell carcinoma with predictive clinical value
PMID: 33456353
7
DDX47 shows diagnostic value in sepsis and septic shock and associates with immune cell function and apoptotic pathways
PMID: 37553903
Disease Associationsⓘ20
Intellectual disabilityOpen Targets
0.12Weak
lung adenocarcinomaOpen Targets
0.02Suggestive
infectionOpen Targets
0.01Suggestive
glioblastoma multiformeOpen Targets
0.01Suggestive
prostate adenocarcinomaOpen Targets
0.01Suggestive
Neurodevelopmental disorderOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
viral diseaseOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
ovarian serous cystadenocarcinomaOpen Targets
0.00Suggestive
chronic myelogenous leukemiaOpen Targets
0.00Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
anemiaOpen Targets
0.00Suggestive
breast cancerOpen Targets
0.00Suggestive
mucous membrane pemphigoidOpen Targets
0.00Suggestive
Neurodevelopmental delayOpen Targets
0.00Suggestive
renal cell carcinomaOpen Targets
0.00Suggestive
clear cell renal carcinomaOpen Targets
0.00Suggestive
Uterine CarcinosarcomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FCF1Protein interaction100%UTP3Protein interaction100%RPS9Protein interaction100%RPS6Protein interaction100%SURF6Protein interaction99%UTP25Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
18%
Lung
17%
Liver
15%
Brain
6%
Heart
5%
Gene Interaction Network
Click a node to explore
DDX47FCF1UTP3RPS9RPS6SURF6UTP25
PROTEIN STRUCTURE
Preparing viewer…
PDB3BER · 1.40 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.31LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.01 [0.79–1.31]
RankingsWhere DDX47 stands among ~20K protein-coding genes
  • #2,933of 20,598
    Most Researched154 · top quartile
  • #13,795of 17,882
    Most Constrained (LOEUF)1.31
Genes detectedDDX47
Sources retrieved16 papers
Response time—
📄 Sources
16▼
1
DDX47, MeCP2, and other functionally heterogeneous factors protect cells from harmful R loops.
PMID: 36827184
Cell Rep · 2023
1.00
2
DDX47 promotes cell proliferation and migration in lung adenocarcinoma.
PMID: 35490652
Pathol Res Pract · 2022
0.90
3
Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell Carcinoma.
PMID: 33456353
Int J Med Sci · 2021
0.80
4
BIOINFORMATICS APPLICATIONS UNDER CONDITION CONTROL: HIGH DIAGNOSTIC VALUE OF DDX47 IN REAL MEDICAL SETTINGS.
PMID: 37553903
Shock · 2024
0.70
5
NOP132 is required for proper nucleolus localization of DEAD-box RNA helicase DDX47.
PMID: 16963496
Nucleic Acids Res · 2006
0.60