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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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IMP3
IMP U3 small nucleolar ribonucleoprotein 3
Chromosome 15 · 15q24.2
NCBI Gene: 55272Ensembl: ENSG00000177971.9HGNC: HGNC:14497UniProt: Q9NV31
95PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingprotein bindingribosomal small subunit biogenesisnucleusneurodegenerative diseaseParkinson diseasemultiple sclerosislysosomal storage disease
✦AI Summary

IMP3 (IMP U3 small nucleolar ribonucleoprotein 3) is a component of the U3 small nucleolar ribonucleoprotein complex required for early cleavages during pre-18S ribosomal RNA processing 1. It functions as part of the small subunit processome, which coordinates ribosome biogenesis through RNA binding, modification, and targeted degradation 2. However, IMP3 has emerged as a clinically significant oncofetal protein with dual roles. In normal physiology, IMP3 expression is largely restricted to fetal tissues, but it is aberrantly reactivated in malignant neoplasms 3. IMP3 promotes tumor cell proliferation, adhesion, and invasion through its RNA-binding capacity 3. In lung adenocarcinoma, IMP3 expression correlates with advanced TNM stage, lymph node metastasis, and poor overall survival, serving as an independent prognostic predictor 4. IMP3 also functions as a diagnostic marker in cholangiocarcinoma and bile duct adenocarcinoma, where it demonstrates strong cytoplasmic staining in malignant tissues but absent or minimal expression in benign epithelium 5. Additionally, IMP3 expression associates with tumor aggressiveness in chondrosarcoma and osteosarcoma, correlating with histological grade and metastatic potential 6. These findings establish IMP3 as a valuable biomarker for cancer diagnosis and prognosis across multiple malignancies.

Sources cited
1
IMP3 is required for early cleavages during pre-18S ribosomal RNA processing
PMID: 12655004
2
IMP3 is part of the small subunit processome and coordinates RNA folding, modifications, and degradation
PMID: 34516797
3
IMP3 is an oncofetal protein associated with malignant neoplasms that promotes tumor cell proliferation, adhesion, and invasion
PMID: 24713990
4
IMP3 expression in lung adenocarcinoma correlates with histological grade, TNM stage, lymph node metastasis, and serves as an independent predictor of poor prognosis
PMID: 26608347
5
IMP3 shows strong cytoplasmic staining in bile duct adenocarcinoma but not in benign epithelium, useful as diagnostic marker
PMID: 20382408
6
IMP3 expression in chondrosarcoma correlates with histological grade and metastatic potential
PMID: 39368400
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.48Moderate
Parkinson diseaseOpen Targets
0.46Moderate
Alzheimer diseaseOpen Targets
0.46Moderate
lysosomal storage diseaseOpen Targets
0.46Moderate
multiple sclerosisOpen Targets
0.46Moderate
type 2 diabetes mellitusOpen Targets
0.16Weak
luminal A breast carcinomaOpen Targets
0.12Weak
neoplasmOpen Targets
0.12Weak
colorectal carcinomaOpen Targets
0.10Weak
gliomaOpen Targets
0.09Suggestive
renal cell carcinomaOpen Targets
0.09Suggestive
non-small cell lung carcinomaOpen Targets
0.09Suggestive
squamous cell carcinomaOpen Targets
0.09Suggestive
prostate cancerOpen Targets
0.08Suggestive
oral squamous cell carcinomaOpen Targets
0.08Suggestive
diffuse large B-cell lymphomaOpen Targets
0.08Suggestive
adenocarcinomaOpen Targets
0.07Suggestive
osteosarcomaOpen Targets
0.07Suggestive
triple-negative breast cancerOpen Targets
0.07Suggestive
ovarian cancerOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NIP7Protein interaction100%GPATCH2Protein interaction100%UTP4Protein interaction100%UTP6Protein interaction100%UTP3Protein interaction100%GPATCH2LProtein interaction100%
Tissue Expression6 tissues
Liver
100%
Brain
70%
Heart
48%
Lung
47%
Ovary
41%
Bone Marrow
37%
Gene Interaction Network
Click a node to explore
IMP3NIP7GPATCH2UTP4UTP6UTP3GPATCH2L
PROTEIN STRUCTURE
Preparing viewer…
PDB7MQA · 2.70 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.96LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.71 [1.11–1.96]
RankingsWhere IMP3 stands among ~20K protein-coding genes
  • #5,036of 20,598
    Most Researched95 · top quartile
  • #17,707of 17,882
    Most Constrained (LOEUF)1.96
Genes detectedIMP3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Oncofetal protein IMP3, a new cancer biomarker.
PMID: 24713990
Adv Anat Pathol · 2014
1.00
2
IMP3 Predicts Invasion and Prognosis in Human Lung Adenocarcinoma.
PMID: 26608347
Lung · 2016
0.90
3
MicroRNA-21: A Critical Pathogenic Factor of Diabetic Nephropathy.
PMID: 35865316
Front Endocrinol (Lausanne) · 2022
0.80
4
Analysis of IMP3 expression in normal and neoplastic human pituitary tissues.
PMID: 19898970
Endocr Pathol · 2010
0.70
5
S100P, von Hippel-Lindau gene product, and IMP3 serve as a useful immunohistochemical panel in the diagnosis of adenocarcinoma on endoscopic bile duct biopsy.
PMID: 20382408
Hum Pathol · 2010
0.60