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4 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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GPATCH2
G-patch domain containing 2
Chromosome 1 · 1q41
NCBI Gene: 55105Ensembl: ENSG00000092978.12HGNC: HGNC:25499UniProt: Q9NW75
34PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nuclear specknucleusnucleic acid bindingnucleolushypertensionalcohol drinkingessential hypertensionneurodegenerative disease
✦AI Summary

GPATCH2 (G-patch domain containing 2) is a nuclear protein that functions as a regulatory cofactor for RNA-dependent ATPases. It enhances the ATPase activity of DHX15 and interacts with hPrp43 to potentiate its enzymatic function 1, positioning it as a modulator of RNA processing. GPATCH2 is predominantly localized to nuclear specks and the nucleus 2. In cancer biology, GPATCH2 plays a multifaceted oncogenic role. In hepatocellular carcinoma, GPATCH2 is markedly upregulated and promotes tumor progression through a YY1-GPATCH2-SNAI2 axis, driving HCC cell proliferation, migration, and invasion while suppressing epithelial markers like CDH1 3. Similarly, in breast cancer, GPATCH2 overexpression is prevalent and its knockdown suppresses cancer cell growth, suggesting essential roles in oncogenic transformation 1. Conversely, GPATCH2 exhibits tumor-suppressive functions in non-transformed contexts. Overexpression of GPATCH2 in 293T cells inhibits NF-κB transcription and cell proliferation by blocking G1-S phase transition 2, indicating cell-type-dependent regulatory roles. GPATCH2 is classified as a cancer/testis antigen with predominant testicular expression 12. Genetic studies associate GPATCH2 variants with age-related glomerular pathology in mice 4, suggesting broader roles in tissue homeostasis.

Sources cited
1
GPATCH2 is upregulated in HCC, promotes tumor progression through SNAI2-mediated epithelial-mesenchymal transition, and is transcriptionally activated by YY1
PMID: 41236130
2
GPATCH2 is overexpressed in breast cancer, enhances hPrp43 ATPase activity through protein interaction, and is classified as a cancer/testis antigen
PMID: 19432882
3
GPATCH2 localizes to the nucleus, inhibits NF-κB transcription and cell proliferation, and blocks G1-S phase transition
PMID: 25376275
4
GPATCH2 genetic variants are associated with age-related glomerular lipoprotein deposits in mice and the gene is highly expressed in kidney tissue
PMID: 25353171
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
hypertensionOpen Targets
0.46Moderate
alcohol drinkingOpen Targets
0.34Weak
essential hypertensionOpen Targets
0.29Weak
neurodegenerative diseaseOpen Targets
0.27Weak
Abnormal blistering of the skinOpen Targets
0.20Weak
JaundiceOpen Targets
0.18Weak
atrial fibrillationOpen Targets
0.17Weak
muscular diseaseOpen Targets
0.16Weak
humerus fractureOpen Targets
0.15Weak
Precordial painOpen Targets
0.14Weak
cervical carcinomaOpen Targets
0.14Weak
alopecia areataOpen Targets
0.12Weak
preeclampsiaOpen Targets
0.12Weak
eye diseaseOpen Targets
0.11Weak
migraine disorderOpen Targets
0.11Weak
pathological myopiaOpen Targets
0.11Weak
adverse effectOpen Targets
0.10Weak
ocular hypotensionOpen Targets
0.10Weak
Urethral strictureOpen Targets
0.10Weak
response to stimulusOpen Targets
0.10Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
UTP3Protein interaction100%NOP14Protein interaction100%UTP6Protein interaction100%BYSLProtein interaction100%IMP3Protein interaction100%NOL6Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
94%
Heart
79%
Liver
66%
Ovary
59%
Lung
58%
Gene Interaction Network
Click a node to explore
GPATCH2UTP3NOP14UTP6BYSLIMP3NOL6
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9NW75
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.23LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.88 [0.63–1.23]
RankingsWhere GPATCH2 stands among ~20K protein-coding genes
  • #11,162of 20,598
    Most Researched34
  • #12,988of 17,882
    Most Constrained (LOEUF)1.23
Genes detectedGPATCH2
Sources retrieved4 papers
Response time—
📄 Sources
4
1
G-Patch Domain-Containing Protein 2, Transcriptionally Activated by YY1, Facilitates the Progression of Hepatocellular Carcinoma by Boosting SNAI2 Expression.
PMID: 41236130
IUBMB Life · 2025
1.00
2
Genetic analysis of intracapillary glomerular lipoprotein deposits in aging mice.
PMID: 25353171
PLoS One · 2014
0.75
3
Involvement of G-patch domain containing 2 overexpression in breast carcinogenesis.
PMID: 19432882
Cancer Sci · 2009
0.50
4
G-patch domain containing 2, a gene highly expressed in testes, inhibits nuclear factor-κB and cell proliferation.
PMID: 25376275
Mol Med Rep · 2015
0.25