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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NIP7
nucleolar pre-rRNA processing protein NIP7
Chromosome 16 · 16q22.1
NCBI Gene: 51388Ensembl: ENSG00000132603.16HGNC: HGNC:24328UniProt: Q9Y221
90PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingprotein bindingnucleolusribosomal large subunit biogenesisneurodegenerative diseaseCOG8-congenital disorder of glycosylationEhlers-Danlos syndrome, musculocontractural typeliposarcoma
✦AI Summary

NIP7 (nucleolar pre-rRNA processing protein NIP7) is an essential nuclear protein required for ribosome biogenesis and pre-rRNA processing. The protein functions primarily in 60S ribosomal subunit assembly in yeast 1, while in humans it is involved in both 40S and 60S subunit biogenesis 2. NIP7 localizes to the nucleolus and associates with pre-ribosomal particles, dissociating as ribosomal subunits mature and are exported to the cytoplasm 3. The protein contains a conserved PUA (pseudouridine synthase and archaeosine transglycosylase) RNA-binding domain, indicating its evolutionary conservation across species 4. Mechanistically, NIP7 is required for proper 34S pre-rRNA processing, particularly at processing site 2, which is critical for 18S rRNA maturation 3. Depletion of NIP7 results in accumulation of 35S and 27S pre-rRNA precursors and decreased 20S pre-rRNA levels, leading to reduced 60S subunit synthesis and impaired protein synthesis 1. Beyond ribosome biogenesis, NIP7 has been implicated in disease contexts, including upregulation in anaplastic thyroid cancer where it promotes tumor growth by regulating UBE2C expression 5, and associations with cardiac structure and function 6.

Sources cited
1
NIP7 is essential for 60S ribosome subunit biogenesis in yeast and causes pre-rRNA processing defects when depleted
PMID: 9271378
2
Human NIP7 is involved in 40S subunit biogenesis and interacts with FTSJ3 in pre-rRNA processing
PMID: 22195017
3
NIP7 is required for 34S pre-rRNA processing and 18S rRNA maturation, localizes to nucleolus and associates with pre-ribosomal particles
PMID: 20798176
4
NIP7 contains a conserved PUA RNA-binding domain and is evolutionarily conserved
PMID: 24393395
5
NIP7 is upregulated in anaplastic thyroid cancer and promotes tumor growth by regulating UBE2C
PMID: 40461291
6
NIP7 is associated with cardiac structure and function through multi-omics analysis
PMID: 40045424
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.47Moderate
COG8-congenital disorder of glycosylationOpen Targets
0.12Weak
Ehlers-Danlos syndrome, musculocontractural typeOpen Targets
0.07Suggestive
liposarcomaOpen Targets
0.02Suggestive
lower respiratory tract diseaseOpen Targets
0.02Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.02Suggestive
papillary thyroid carcinomaOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
hyperinsulinemic hypoglycemia, familial, 4Open Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
AIDS dementiaOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
squamous cell carcinomaOpen Targets
0.00Suggestive
gliomaOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
glioblastomaOpen Targets
0.00Suggestive
Thyroid Gland Undifferentiated (Anaplastic) CarcinomaOpen Targets
0.00Suggestive
lymphomaOpen Targets
0.00Suggestive
Uveal MelanomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
IMP3Protein interaction100%NIFKProtein interaction99%RPLP0Protein interaction98%RPF2Protein interaction97%NOL8Protein interaction97%TFB1MProtein interaction95%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
54%
Brain
51%
Lung
43%
Heart
39%
Ovary
31%
Gene Interaction Network
Click a node to explore
NIP7IMP3NIFKRPLP0RPF2NOL8TFB1M
PROTEIN STRUCTURE
Preparing viewer…
PDB1SQW · 1.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.91LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.56 [0.36–0.91]
RankingsWhere NIP7 stands among ~20K protein-coding genes
  • #5,320of 20,598
    Most Researched90
  • #8,292of 17,882
    Most Constrained (LOEUF)0.91
Genes detectedNIP7
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The human nucleolar protein FTSJ3 associates with NIP7 and functions in pre-rRNA processing.
PMID: 22195017
PLoS One · 2011
1.00
2
Isolation, sequence analysis and expression profile of a novel porcine gene, NIP7, differentially expressed in the Longissimus dorsi muscle tissues from Meishan, Meishan x Large White cross and Large White pigs.
PMID: 17187224
Mol Biol Rep · 2007
0.90
3
The NIP7 protein is required for accurate pre-rRNA processing in human cells.
PMID: 20798176
Nucleic Acids Res · 2011
0.80
4
[NIP7 upregulates the expression of ubiquitin-conjugating enzyme E2 C to promote tumor growth in anaplastic thyroid cancer].
PMID: 40461291
Zhejiang Da Xue Xue Bao Yi Xue Ban · 2025
0.70
5
Protein universe containing a PUA RNA-binding domain.
PMID: 24393395
FEBS J · 2014
0.60