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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RPF2
ribosome production factor 2 homolog
Chromosome 6 · 6q21
NCBI Gene: 84154Ensembl: ENSG00000197498.14HGNC: HGNC:20870UniProt: Q9H7B2
118PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein localization to nucleolusnucleoluschromosomeribosomal large subunit biogenesisneurodegenerative diseaseHypercholesterolemiacolorectal carcinomaHelicobacter pylori infectious disease
✦AI Summary

RPF2 (ribosome production factor 2 homolog) is a nucleolar protein essential for ribosomal large subunit (LSU) biogenesis. Its primary function involves chaperoning 5S rRNA assembly into the 5S ribonucleoprotein particle (RNP) 1. RPF2 forms a specialized complex with Rrs1 that contains a 5S RNA-binding module and contacts ribosomal proteins Rpl5 and Rpl11, establishing interactions that guide incorporation of the 5S RNP into preribosomes prior to rotation into the mature LSU central protuberance 1. The protein localizes primarily to the nucleolus 2. Beyond ribosome assembly, RPF2 has emerged as an oncogenic factor across multiple cancers. In hepatocellular carcinoma (HCC), high nuclear RPF2 expression correlates with poor prognosis, vascular invasion, and advanced tumor characteristics; RPF2 overexpression promotes cell proliferation, migration, and invasion 2. Similarly, in colorectal cancer (CRC), RPF2 drives metastasis through epithelial-mesenchymal transition (EMT) via the AKT/GSK-3β signaling pathway, with CARM1 as a critical mediator 3. In collecting duct carcinoma, elevated RPF2 associates with malignant phenotypes and enhanced ribosome biogenesis; targeting RPF2 suppresses ribosome biogenesis and disrupts MDM2-p53 interaction 4. RPF2 represents a promising therapeutic target and biomarker for cancer prognosis and treatment.

Sources cited
1
RPF2-Rrs1 complex structure and function in 5S RNP assembly and nucleolar localization
PMID: 26159998
2
RPF2 upregulation in HCC tissues correlates with poor prognosis, vascular invasion, and promotes cell proliferation/migration/invasion
PMID: 38307254
3
RPF2 elevation associates with ribosome biogenesis activation in collecting duct carcinoma and targeting RPF2 disrupts MDM2-p53 interaction
PMID: 40917497
4
RPF2 promotes colorectal cancer metastasis through EMT via AKT/GSK-3β signaling pathway with CARM1 as downstream mediator
PMID: 39674359
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.48Moderate
HypercholesterolemiaOpen Targets
0.28Weak
colorectal carcinomaOpen Targets
0.08Suggestive
Helicobacter pylori infectious diseaseOpen Targets
0.04Suggestive
cancerOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
asthmaOpen Targets
0.02Suggestive
gastric cancerOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
colorectal cancerOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
infectionOpen Targets
0.00Suggestive
liver cancerOpen Targets
0.00Suggestive
cervical squamous cell carcinomaOpen Targets
0.00Suggestive
depressive disorderOpen Targets
0.00Suggestive
lung adenocarcinomaOpen Targets
0.00Suggestive
major depressive disorderOpen Targets
0.00Suggestive
BlindnessOpen Targets
0.00Suggestive
cirrhosis of liverOpen Targets
0.00Suggestive
breast cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
EIF6Protein interaction100%VARS1Protein interaction100%MDN1Protein interaction100%ZNF593Protein interaction100%RSL24D1Protein interaction100%GAMTProtein interaction99%
Tissue Expression6 tissues
Liver
100%
Heart
95%
Ovary
72%
Brain
57%
Lung
54%
Bone Marrow
52%
Gene Interaction Network
Click a node to explore
RPF2EIF6VARS1MDN1ZNF593RSL24D1GAMT
PROTEIN STRUCTURE
Preparing viewer…
PDB8RL2 · 2.84 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.81LoF Tolerant
pLIⓘ
0.11Tolerant
Observed/Expected LoF0.47 [0.28–0.81]
RankingsWhere RPF2 stands among ~20K protein-coding genes
  • #4,012of 20,598
    Most Researched118 · top quartile
  • #6,841of 17,882
    Most Constrained (LOEUF)0.81
Genes detectedRPF2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Chaperoning 5S RNA assembly.
PMID: 26159998
Genes Dev · 2015
1.00
2
Proteogenomic Analysis Identifies Clinically Relevant Subgroups of Collecting Duct Carcinoma.
PMID: 40917497
Research (Wash D C) · 2025
0.90
3
Clinical significance of ribosome production factor 2 homolog in hepatocellular carcinoma.
PMID: 38307254
Clin Res Hepatol Gastroenterol · 2024
0.80
4
A Drug-Tunable Gene Therapy for Broad-Spectrum Protection against Retinal Degeneration.
PMID: 30078764
Mol Ther · 2018
0.70
5
Identification of Novel lncRNAs Related to Colorectal Cancer Through Bioinformatics Analysis.
PMID: 39949372
Biomed Res Int · 2025
0.60