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GeneE
4 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
GPATCH2L
G-patch domain containing 2 like
Chromosome 14 Β· 14q24.3
NCBI Gene: 55668Ensembl: ENSG00000089916.19HGNC: HGNC:20210UniProt: Q9NWQ4
24PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingnucleussecondary malignant neoplasmtype 1 diabetes nephropathyadolescent idiopathic scoliosischronic fatigue syndrome
✦AI Summary

GPATCH2L is a nuclear protein containing a G-patch domain with roles in multiple disease pathways. Its primary function remains incompletely characterized, though it localizes to the nucleus and mediates protein interactions 1. In systemic sclerosis, GPATCH2L shows increased tubular expression in scleroderma renal crisis (SRC) kidney tissue compared to controls 1, and genetic variants in GPATCH2L (rs935332) associate with SRC development in anti-RNA polymerase III antibody-positive patients across two independent cohorts 1. Functionally, GPATCH2L demonstrates relevance to Parkinson's disease susceptibility; RNAi-mediated knockdown studies revealed it modulates mitochondrial dynamics in human neuronal cultures and shows evidence of genetic replication in independent datasets 2. Additionally, GPATCH2L variants nominally associate with orofacial cleft risk in parent-of-origin effects under conditions of inadequate periconceptional folic acid supplementation 3. Recent genome-wide association studies identify GPATCH2L as a prioritized causal gene for pilonidal sinus disease, suggesting involvement in hair growth and patterning pathways 4. Overall, GPATCH2L contributes to pathogenesis in vascular, neurological, developmental, and dermatological diseases, primarily through effects on tissue-specific cellular processes.

Sources cited
1
GPATCH2L SNP rs935332 associates with scleroderma renal crisis in ARA-positive patients; increased tubular expression in SRC kidney tissue
PMID: 32173657
2
GPATCH2L modulates mitochondrial dynamics in human neuronal cultures and shows evidence of genetic replication for Parkinson's disease susceptibility
PMID: 28137300
3
GPATCH2L variants show nominal association with orofacial cleft risk in parent-of-origin gene-folate interaction analysis
PMID: 40004524
4
GPATCH2L identified as prioritized causal gene for pilonidal sinus disease with roles in hair growth and patterning
PMID: 38902823
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
secondary malignant neoplasmOpen Targets
0.29Weak
type 1 diabetes nephropathyOpen Targets
0.28Weak
adolescent idiopathic scoliosisOpen Targets
0.28Weak
chronic fatigue syndromeOpen Targets
0.26Weak
smoking initiationOpen Targets
0.18Weak
DNA methylationOpen Targets
0.18Weak
migraine disorderOpen Targets
0.14Weak
lagophthalmosOpen Targets
0.11Weak
thyroid cancerOpen Targets
0.04Suggestive
ovarian dysfunctionOpen Targets
0.04Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
Pick diseaseOpen Targets
0.01Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.01Suggestive
type 1 diabetes mellitusOpen Targets
0.01Suggestive
cancerOpen Targets
0.00Suggestive
hyperplasiaOpen Targets
0.00Suggestive
systemic sclerodermaOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
cervical cancerOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
UTP3Protein interaction100%NOP14Protein interaction100%UTP6Protein interaction100%BYSLProtein interaction100%IMP3Protein interaction100%NOL6Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
47%
Ovary
44%
Brain
44%
Heart
39%
Liver
22%
Gene Interaction Network
Click a node to explore
GPATCH2LUTP3NOP14UTP6BYSLIMP3NOL6
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9NWQ4
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.77LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF0.51 [0.35–0.77]
RankingsWhere GPATCH2L stands among ~20K protein-coding genes
  • #13,198of 20,598
    Most Researched24
  • #6,218of 17,882
    Most Constrained (LOEUF)0.77
Genes detectedGPATCH2L
Sources retrieved4 papers
Response timeβ€”
πŸ“„ Sources
4
1
Analysis of Anti-RNA Polymerase III Antibody-positive Systemic Sclerosis and Altered GPATCH2L and CTNND2 Expression in Scleroderma Renal Crisis.
PMID: 32173657
J Rheumatol Β· 2020
1.00
2
Maternal and Parent-of-Origin Gene-Environment Effects on the Etiology of Orofacial Clefting.
PMID: 40004524
Genes (Basel) Β· 2025
0.75
3
Discovery and functional prioritization of Parkinson's disease candidate genes from large-scale whole exome sequencing.
PMID: 28137300
Genome Biol Β· 2017
0.50
4
Genome-Wide Association Study Identifies Genes for Hair Growth and Patterning are Associated With Pilonidal Disease.
PMID: 38902823
Dis Colon Rectum Β· 2024
0.25